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https://github.com/corneliusroemer/seqs
https://github.com/corneliusroemer/seqs
Last synced: 24 days ago
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- Host: GitHub
- URL: https://github.com/corneliusroemer/seqs
- Owner: corneliusroemer
- Created: 2024-05-19T18:23:07.000Z (6 months ago)
- Default Branch: main
- Last Pushed: 2024-07-18T08:53:09.000Z (4 months ago)
- Last Synced: 2024-07-18T11:06:14.756Z (4 months ago)
- Language: Python
- Size: 167 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# Translation helper
Run with:
```bash
snakemake -F
```
## Config
To use translate different Nextclade datasets, configure via `profiles/default/configfile.yaml` or passing
config options explicitly to the snakemake command.
Example:
```bash
s --config dataset_name=nextstrain/ebola/zaire dataset_server="https://raw.githubusercontent.com/nextstrain/nextclade_data/ebola/data_output" output_dir="ebola-zaire"
```