https://github.com/cpanse/rawdiag

git mirror of the bioconductor version
https://github.com/cpanse/rawdiag

bioconductor-package fun lang massspectrometry orbitrap-ms r

Last synced: 10 months ago
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git mirror of the bioconductor version

• Host: GitHub
• URL: https://github.com/cpanse/rawdiag
• Owner: cpanse
• Created: 2023-11-30T11:41:30.000Z (about 2 years ago)
• Default Branch: devel
• Last Pushed: 2024-03-28T09:55:11.000Z (almost 2 years ago)
• Last Synced: 2025-02-08T16:28:28.872Z (11 months ago)
• Topics: bioconductor-package, fun, lang, massspectrometry, orbitrap-ms, r
• Language: R
• Homepage: https://bioconductor.org/packages/rawDiag/
• Size: 179 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md

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README

          
[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.8b00173-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.8b00173)

# rawDiag 

![octopussy](vignettes/octopussy.png)

an R package supporting rational LC-MS method optimization for bottom-up proteomics on multiple OS platforms

main features:

 

1. **multiplatform** and **fast** reading through using [The New RawFileReader from Thermo Fisher Scientific](http://planetorbitrap.com/rawfilereader).

2. uses latest visualization generation through using Rs [ggplot2](https://cran.r-project.org/package=ggplot2) package.

3. provides an R interface to your instrument raw data.

4. ships with an example [shiny application](http://fgcz-ms-shiny.uzh.ch:8080/bfabric_rawDiag/).