Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
https://github.com/cph-cachet/cachet-ecg-db
Python scripts for CACHET-ECG-DB
https://github.com/cph-cachet/cachet-ecg-db
Last synced: 4 days ago
JSON representation
Python scripts for CACHET-ECG-DB
- Host: GitHub
- URL: https://github.com/cph-cachet/cachet-ecg-db
- Owner: cph-cachet
- License: other
- Created: 2021-03-07T03:53:53.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2022-07-13T09:03:48.000Z (over 2 years ago)
- Last Synced: 2024-04-16T10:58:26.645Z (7 months ago)
- Language: Jupyter Notebook
- Size: 271 KB
- Stars: 1
- Watchers: 3
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# CACHET-CADB ToolKit
[](https://github.com/cph-cachet/cachet-ecg-db)
[](https://opensource.org/licenses/MIT)
This repro contains the Python scripts and other tools to access the data in the CACHET Contextualised Arrhythmia Database (CACHET-CADB)
## CACHET-CADB
CACHET-CADB is 259 days long contextualised single-channel ECG arrhythmia database from 24 patients recording under a free-living ambulatory setting. Along with the ECG, it also contains contextual information such as activities, body position, movement acceleration, patients reported unusual symptoms/events diary, step counts, patient-reported sleep quality, stress level, and food intake. I contain 1602 ten-second long ECG samples of AF, NSR, noise, and other rhythm classes, which are manually annotated by two cardiologists. The ECG is sampled at 1024 Hz and a 12-bit resolution.
The CACHET-CADB is available from DTU Data in two formats:
* [CACHET-CADB](https://data.dtu.dk/articles/dataset/CACHET-CADB/14547264)
* [CACHET-CADB Short Format](https://data.dtu.dk/articles/dataset/CACHET-CADB_Short_Format/14547330)
## Installation
Python libraries for reading Unisens file format:
```pip install git+https://github.com/Unisens/pyunisens```
Read more about [Unisens](http://unisens.org/features.html) file format for simultaneous and synchronous storage of multi-sensor data at different sample rates.
## Tool for UI based inspection of the raw file
The [UnisensViewer](http://software.unisens.org/download/UnisensViewer/UnisensViewer_Setup.exe) is an application which can be used to view and browse the raw unisense files. Note that this tool is only avalable on Windows.
## Jupiter notebook for database
We provide the [`CACHET-CADB-NoteBook.ipynb`](https://github.com/cph-cachet/cachet-ecg-db/blob/master/CACHET-CADB-NoteBook.ipynb) as an illustration on how to use the CACHET-CADB data in Python.
## Main Script for reading the annotations and the ECG
The [`cachet-cadb_analysisMain.py`](https://github.com/cph-cachet/cachet-ecg-db/blob/master/cachet-cadb_analysisMain.py) Python script contains funtions to read the database and all the statistics.
## Features and bugs
Please read about existing issues and file new feature requests and bug reports at the [issue tracker][tracker].
[tracker]: https://github.com/cph-cachet/cachet-ecg-db/issues
## License
This software is copyright (c) [Copenhagen Center for Health Technology (CACHET)](https://www.cachet.dk/) at the [Technical University of Denmark (DTU)](https://www.dtu.dk).
This software is available 'as-is' under a [MIT license](https://github.com/cph-cachet/cachet-ecg-db/blob/master/LICENSE).
## Citation
When using the CACHET-CADB dataset and code, please cite its data descriptor article :
```
@article{kumar2022cachet,
title={CACHET-CADB: A Contextualized Ambulatory Electrocardiography Arrhythmia Dataset},
author={Kumar, Devender and Puthusserypady, Sadasivan and Dominguez, Helena and Sharma, Kamal and Bardram, Jakob E},
journal={Frontiers in Cardiovascular Medicine},
pages={1702},
year={2022},
publisher={Frontiers}
}
```