https://github.com/crclark/optnetaligncpp
Approximate subgraph isomorphisms for biological networks
https://github.com/crclark/optnetaligncpp
bioinformatics
Last synced: 4 months ago
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Approximate subgraph isomorphisms for biological networks
- Host: GitHub
- URL: https://github.com/crclark/optnetaligncpp
- Owner: crclark
- License: gpl-3.0
- Created: 2014-07-25T17:03:38.000Z (about 11 years ago)
- Default Branch: master
- Last Pushed: 2016-10-15T17:35:50.000Z (almost 9 years ago)
- Last Synced: 2025-06-12T01:03:59.383Z (4 months ago)
- Topics: bioinformatics
- Language: C++
- Homepage:
- Size: 9.96 MB
- Stars: 2
- Watchers: 1
- Forks: 1
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
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README
optnetaligncpp
==============
Optimizing network aligner
### Quick start
Install the C++ Boost libraries on your system, then do the following:
```
make optnetalignubuntu
./optnetalign --net1 scere.net --net2 dmela.net --total --s3 --bitscores sc-dm.sim --blastsum --annotations1 scere.annos --annotations2 dmela.annos --cxrate 0.05 --cxswappb 0.75 --mutrate 0.05 --mutswappb 0.0001 --oneobjrate 0.75 --dynparams --popsize 200 --generations 1000000000 --hillclimbiters 10000 --timelimit 720 --outprefix sc-dm1 --finalstats >> sc-dm1.finalstats
```
For more information, see manual.tex