https://github.com/creisle/lamprflp

JS module for calculating LAMP RFLP fragment lengths
https://github.com/creisle/lamprflp

bioinformatics javascript lamp nodejs npm

Last synced: 7 days ago
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JS module for calculating LAMP RFLP fragment lengths

• Host: GitHub
• URL: https://github.com/creisle/lamprflp
• Owner: creisle
• License: mit
• Created: 2020-03-29T00:14:48.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2023-01-05T17:42:55.000Z (almost 2 years ago)
• Last Synced: 2023-08-19T06:10:29.705Z (about 1 year ago)
• Topics: bioinformatics, javascript, lamp, nodejs, npm
• Language: JavaScript
• Homepage:
• Size: 205 KB
• Stars: 2
• Watchers: 3
• Forks: 1
• Open Issues: 10
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# LAMP RFLP

[![npm version](https://badge.fury.io/js/lamprflp.svg)](https://www.npmjs.com/package/lamprflp)

This is the JS module used by the site: http://creisle.github.io/creisle.lamprflp/

This computes the lamp products from a FASTA input file and outputs the fragments required

for the visual

## Getting Started

Install from npm

```bash

npm install lamprflp

```

then this can be used in a node module as follows

```js

const {createLampReaction} = require('lamprflp');

const {lanes} = createLampReaction(`

> b1

cgactctagaggatccccgggtac

> b2

tgttgtgtggaattgtgagcggat

> f1

acaacgtcgtgactgggaaaaccct

> f2

gtgcgggcctcttcgctattac

> seq

AATGCTACTACTATTAGTAG...TATGATTTATTGGATGTT

`, ['100bp', '50bp', '', 'RsaI']);

```

## Running the Tests

Tests are written with Jest and can be run as follows

```bash

npm test

```