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https://github.com/csdms/ivy
Course material on scientific software development for researchers in earth and planetary surface processes
https://github.com/csdms/ivy
bash best-practices bmi csdms education geoscience git hpc jupyter landlab pymt python
Last synced: 2 days ago
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Course material on scientific software development for researchers in earth and planetary surface processes
- Host: GitHub
- URL: https://github.com/csdms/ivy
- Owner: csdms
- License: other
- Created: 2020-07-08T22:25:21.000Z (over 4 years ago)
- Default Branch: main
- Last Pushed: 2024-09-08T20:38:56.000Z (4 months ago)
- Last Synced: 2024-09-12T22:25:42.790Z (4 months ago)
- Topics: bash, best-practices, bmi, csdms, education, geoscience, git, hpc, jupyter, landlab, pymt, python
- Language: Jupyter Notebook
- Homepage: https://csdms.colorado.edu
- Size: 38.5 MB
- Stars: 75
- Watchers: 11
- Forks: 58
- Open Issues: 14
-
Metadata Files:
- Readme: README.ipynb
- Changelog: CHANGES.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
- Code of conduct: CODE-OF-CONDUCT.md
- Citation: CITATION.cff
- Authors: AUTHORS.md
Awesome Lists containing this project
README
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"\n",
"\n",
"\n",
"\n",
"[jhub]: https://csdms.colorado.edu/wiki/JupyterHub\n",
"[badge]: https://img.shields.io/badge/Run%20on-EarthscapeHub-orange\n",
"[jupyter]: ./lessons/jupyter/index.md\n",
"[shell]: ./lessons/shell/index.md\n",
"[editors]: ./lessons/editors/index.md\n",
"[conda]: ./lessons/conda/index.md\n",
"[python]: ./lessons/python/index.ipynb\n",
"[git]: ./lessons/git/index.md\n",
"[bmi]: ./lessons/bmi/index.ipynb\n",
"[landlab]: ./lessons/landlab/landlab/00_welcome.ipynb\n",
"[pymt]: ./lessons/pymt/index.ipynb\n",
"[permamodel]: ./lessons/permamodel/index.ipynb\n",
"[best-practices]: ./lessons/best-practices/index.md\n",
"[hpc]: ./lessons/hpc/index.md\n",
"[jhub-link]: https://explore.openearthscape.org/hub/user-redirect/git-pull?repo=https%3A%2F%2Fgithub.com%2Fcsdms%2Fivy&urlpath=lab%2Ftree%2Fivy%2FREADME.ipynb%3Fautodecode&branch=main\n",
"[jhub-info]: https://csdms.colorado.edu/wiki/JupyterHub\n",
"[swc]: http://software-carpentry.org\n",
"[swc-license]: https://github.com/swcarpentry/python-novice-inflammation/blob/gh-pages/LICENSE.md\n",
"[coco]: https://github.com/CodeToCommunicate\n",
"[coco-license]: https://github.com/CodeToCommunicate/CoCoLessons/blob/main/LICENSE\n",
"[comses]: https://comses.net\n",
"[comses-license]: https://github.com/comses-education/fair-osg-template/blob/main/LICENSE\n",
"\n",
"# CSDMS Ivy\n",
"\n",
"CSDMS Ivy is a collection of instructional materials on\n",
"\n",
"* modern, collaborative, scientific software development, and\n",
"* use of community cyberinfrastructure tools\n",
"\n",
"for researchers in earth and planetary surface processes.\n",
"\n",
"CSDMS Ivy is\n",
"written and maintained by the\n",
"[Community Surface Dynamics Modeling System ](https://csdms.colorado.edu)(CSDMS).\n",
"\n",
"## Lessons\n",
"\n",
"CSDMS Ivy lessons are modular and independent,\n",
"although the ordering below represents a typical progression.\n",
"\n",
"1. [Project Jupyter][jupyter]\n",
"1. [Introduction to the Shell][shell]\n",
"1. [Text Editors and Development Environments][editors]\n",
"1. [Python Fundamentals][python]\n",
"1. [Anaconda and conda][conda]\n",
"1. [Version Control with git and GitHub][git]\n",
"1. [Python for Modeling][python]\n",
"1. [Landlab][landlab]\n",
"1. [The Basic Model Interface (BMI)][bmi]\n",
"1. [The Python Modeling Toolkit (pymt)][pymt]\n",
"1. [Permamodel Toolkit][permamodel]\n",
"1. [Introduction to Cluster Computing][hpc]\n",
"1. [Best Practices in Scientific Software Development][best-practices]\n",
"\n",
"The lessons can be run locally\n",
"if a user installs Anaconda and a `git` client on their computer.\n",
"All lessons are also available to run\n",
"on [EarthscapeHub][jhub].\n",
"Click this button:\n",
"\n",
"[![Run on EarthscapeHub][badge]][jhub-link]\n",
"\n",
"to open the lessons directly on the EarthscapeHub *explore* instance!\n",
"\n",
"> **Note:** The EarthscapeHub *explore* instance is password-protected.\n",
" Please contact your instructor about obtaining a login,\n",
" or visit [this][jhub-info] CSDMS wiki page for more information.\n",
"\n",
"## Contributing\n",
"\n",
"CSDMS Ivy is an open source project;\n",
"[contributions](./CONTRIBUTING.md) that follow\n",
"the [contributor code of conduct](./CODE-OF-CONDUCT.md) are welcomed\n",
"and are [acknowledged](./AUTHORS.md).\n",
"All CSDMS Ivy course material is\n",
"released under [CC BY 4.0 and MIT licenses](./LICENSE.md).\n",
"If you use the CSDMS Ivy course material,\n",
"please [cite](./CITATION.cff) it.\n",
"\n",
"[](https://zenodo.org/badge/latestdoi/278206679)\n",
"\n",
"## Acknowledgments\n",
"\n",
"CSDMS Ivy grew from a National Science Foundation Cybertraining pilot program,\n",
"*Cybertraining: Pilot: Collaborative Research:\n",
"Cybertraining for Earth Surface Processes Modelers*\n",
"(award numbers\n",
"[1924259](https://www.nsf.gov/awardsearch/showAward?AWD_ID=1924259) and\n",
"[1924185](https://www.nsf.gov/awardsearch/showAward?AWD_ID=1924185)).\n",
"\n",
"Portions of the CSDMS Ivy Python lessons are derived\n",
"from material that is copyright\n",
"[Software Carpentry][swc]\n",
"and remixed under their [license][swc-license].\n",
"The Project Jupyter lesson\n",
"is taken from the [Code to Communicate][coco] project\n",
"and modified under their [license][coco-license].\n",
"Material in the FAIR software lesson is adapted,\n",
"under [license][comses-license],\n",
"from a [CoMSES Net][comses] project.\n",
"\n",
"CSDMS Ivy is supported with funding from the National Science Foundation."
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