https://github.com/csinva/biophysical-threshold-simulations
Simulations for characterizing stochastic threshold in biophysical neurons.
https://github.com/csinva/biophysical-threshold-simulations
biophysical neuron simulation stochastic threshold
Last synced: about 1 year ago
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Simulations for characterizing stochastic threshold in biophysical neurons.
- Host: GitHub
- URL: https://github.com/csinva/biophysical-threshold-simulations
- Owner: csinva
- Created: 2018-02-25T20:14:37.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2018-06-17T03:24:52.000Z (about 8 years ago)
- Last Synced: 2025-02-08T13:43:02.879Z (over 1 year ago)
- Topics: biophysical, neuron, simulation, stochastic, threshold
- Language: Jupyter Notebook
- Homepage:
- Size: 679 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# installing NEURON
- download the OS installer for Mac
- to get nrn to run, I also had to install X11 as described on their website
# compiling mod files
- the files in the `mechanism` directory must be compiled before they are usable
- to do this on mac, drag the entire `mechanism` directory into the mknrndll function in Applications
- this results in the creation of an x86_64 subfolder in the mechanism folder
# running
- to run, cd into the mechanism directory
- running `nrngui run_act.hoc` should open the NEURON gui and display a plot of an action potential with the current settings
- `run_main.hoc` has more complicated settings