https://github.com/csoneson/tabulamurisdata

Access data from Tabula Muris Consortium via R/Bioconductor
https://github.com/csoneson/tabulamurisdata

Last synced: 1 day ago
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Access data from Tabula Muris Consortium via R/Bioconductor

• Host: GitHub
• URL: https://github.com/csoneson/tabulamurisdata
• Owner: csoneson
• License: other
• Created: 2018-08-26T12:12:26.000Z (over 6 years ago)
• Default Branch: devel
• Last Pushed: 2024-12-21T18:19:44.000Z (17 days ago)
• Last Synced: 2025-01-04T14:11:47.301Z (4 days ago)
• Language: R
• Homepage:
• Size: 116 KB
• Stars: 2
• Watchers: 4
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS
  • License: LICENSE

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README

        
## Tabula Muris data

R/[ExperimentHub](https://bioconductor.org/packages/release/bioc/html/ExperimentHub.html) package for accessing data from the [Tabula Muris Consortium](http://tabula-muris.ds.czbiohub.org/) as [`SingleCellExperiment`](https://bioconductor.org/packages/release/bioc/html/SingleCellExperiment.html) objects.

If you use the data, please cite the original [publication](https://www.nature.com/articles/s41586-018-0590-4): 

- The Tabula Muris Consortium: Single-cell transcriptomics of 20 mouse organs creates a _Tabula Muris_. Nature doi:10.1038/s41586-018-0590-4 (2018).

Processed data files and metadata were downloaded from the links provided in [this GitHub repository](https://github.com/czbiohub/tabula-muris-vignettes/tree/master/data) on August 26, 2018:

- [Droplet count matrix](https://s3.amazonaws.com/czbiohub-tabula-muris/TM_droplet_mat.rds)

- [Droplet metadata](https://github.com/czbiohub/tabula-muris-vignettes/blob/master/data/TM_droplet_metadata.csv)

- [SmartSeq2 count matrix](https://s3.amazonaws.com/czbiohub-tabula-muris/TM_facs_mat.rds)

- [SmartSeq2 metadata](https://github.com/czbiohub/tabula-muris-vignettes/blob/master/data/TM_facs_metadata.csv)