https://github.com/ctb/2021-snakemake-checkpoints-example

https://github.com/ctb/2021-snakemake-checkpoints-example

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/ctb/2021-snakemake-checkpoints-example
• Owner: ctb
• Created: 2021-01-21T14:34:45.000Z (over 5 years ago)
• Default Branch: latest
• Last Pushed: 2022-11-20T15:17:19.000Z (over 3 years ago)
• Last Synced: 2025-06-16T13:12:08.618Z (about 1 year ago)
• Size: 7.81 KB
• Stars: 3
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# 2021-snakemake-checkpoints-example

These are example Snakefiles for a blog post on checkpoints in snakemake.

Blog post: [A snakemake hack for checkpoints](http://ivory.idyll.org/blog/2021-snakemake-checkpoints.html)

Look at the top of each Snakefile to see run info.

To reset the directory to a clean state, do:

```

rm -f output* .*.touch names.csv

```