https://github.com/ctb/2024-human-contam

Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
https://github.com/ctb/2024-human-contam

sourmash

Last synced: 4 months ago
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Explore microbial contamination in human whole-genome shotgun data sets, using sourmash

• Host: GitHub
• URL: https://github.com/ctb/2024-human-contam
• Owner: ctb
• Created: 2024-05-11T15:31:05.000Z (about 2 years ago)
• Default Branch: main
• Last Pushed: 2024-05-13T14:36:00.000Z (about 2 years ago)
• Last Synced: 2025-03-04T14:49:22.699Z (over 1 year ago)
• Topics: sourmash
• Language: Python
• Homepage: https://github.com/sourmash-bio/sourmash/issues/3151
• Size: 7.81 KB
• Stars: 3
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# 2024-human-contam

starter repo for detecting and eventually removing microbial contamination in human WGS samples using sourmash.

See https://github.com/sourmash-bio/sourmash/issues/3151 for more info.