https://github.com/ctb/blastkit

https://github.com/ctb/blastkit

Last synced: 11 months ago
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• Host: GitHub
• URL: https://github.com/ctb/blastkit
• Owner: ctb
• Created: 2009-06-14T00:36:41.000Z (about 17 years ago)
• Default Branch: master
• Last Pushed: 2015-05-03T20:13:16.000Z (about 11 years ago)
• Last Synced: 2025-04-05T11:11:27.283Z (about 1 year ago)
• Language: Python
• Homepage:
• Size: 376 KB
• Stars: 9
• Watchers: 3
• Forks: 4
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

          
An intentionally very simple and somewhat programmable BLAST Web server.

C. Titus Brown

ctb@msu.edu

Copyright: 2013, Michigan State University.

License: BSD

----

Requirements:

 - Python 2.x, x >= 5.

 - screed

 - jinja2

Suggested additional packages:

 - virtualenv

Installation:

 - make a new virtualenv:

         python -m virtualenv env

 - activate virtualenv and install screed and jinja2

         . env/bin/activate

         pip install git+https://github.com/ged-lab/screed.git

         pip install jinja2

Configure:

 - point #! at top of www/*.cgi at the virtualenv python

 - edit www/_mypath.py to point to the right lib/ directory

 - edit lib/blastkit_config.py to contain the right paths.

 - create www/files & chmod appropriately:

         mkdir www/files

         chmod a+rwxt www/files

 - configure blastall location

 - check databases for indexing.