https://github.com/cthoyt/obo-relations-interactions
https://github.com/cthoyt/obo-relations-interactions
Last synced: about 2 months ago
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- Host: GitHub
- URL: https://github.com/cthoyt/obo-relations-interactions
- Owner: cthoyt
- License: cc0-1.0
- Created: 2022-01-11T18:07:14.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2022-01-12T19:45:01.000Z (over 3 years ago)
- Last Synced: 2025-01-22T16:24:57.237Z (4 months ago)
- Language: Python
- Size: 22.5 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Relation Ontology Extension Demo
This repository demonstrates auto-generation of new molecular interaction
relationships as a follow-up to https://github.com/oborel/obo-relations/pull/522
.
## Artifacts
| File | Description |
|----------------------------------|-------------------------|
| [`relations.tsv`](relations.tsv) | The input curation file |
| [`relations.owl`](relations.owl) | The output OWL file |
Fields in the input file:
1. `add_helper_id` the RO identifier for the helper identifier for the add
relationship
2. `add_id` the RO identifier for the add relationship
3. `remove_helper_id` the RO identifier for the helper identifier for the remove
relationship
4. `remove_id` the RO identifier for the remove relationship
5. `add_name` the name of the addition relationship, e.g., *palmitoylates*
6. `group_name` the name of the group that's added, e.g., *palmitoyl group*
7. `group_chebi_id` the CHEBI identifier (as a CURIE) for the group that's
added, e.g., `CHEBI:25456`
8. `add_go_id` the GO identifier (as a CURIE) for the corresponding molecular
function related to adding the group
9. `add_go_name` the GO name for above, e.g., *palmitoyltransferase activity*
10. `remove_go_id` the GO identifier (as a CURIE) for the corresponding
molecular function related to removing the group
11. `remove_go_name` th GO name for above
12. `orcid` the ORCID identifier of the contributor
## How to Build
Run with `tox` like:
```shell
$ pip install tox
$ tox
```
## License
Code in this repository is licensed under MIT and data under CC0.