https://github.com/cthoyt/orcidio

🐨 Make a subset of ORCID available as an OWL ontology
https://github.com/cthoyt/orcidio

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🐨 Make a subset of ORCID available as an OWL ontology

• Host: GitHub
• URL: https://github.com/cthoyt/orcidio
• Owner: cthoyt
• Created: 2022-11-21T20:53:05.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-09-15T00:16:32.000Z (about 2 months ago)
• Last Synced: 2024-09-15T07:08:12.872Z (about 2 months ago)
• Language: Python
• Homepage:
• Size: 2.75 MB
• Stars: 2
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
# ORCID in OWL

Motivated by [Bill Duncan's comments](https://obo-communitygroup.slack.com/archives/C01R2D66249/p1669063375689969)

on annotating ORCID identifiers with labels in ontologies, the goal of this repository is to make an OWL

file that has OBO contributors as named individuals.

The PURL for this ontology is https://w3id.org/orcidio/orcidio.owl.

## Screenshot

In this Protégé screenshot, you can see that the named individuals are available:

![](img/screenshot-1.png)

You can see anywhere in Protégé you use ORCID URIs, they will get shown with their labels and linked back to the named

individuals.

![](img/screenshot-2.png)

## How to add more ORCIDs to this ontology

This ontology is not a full dump of ORCID, but rather a subset that is useful for contextualizing structured

contributions in OBO Foundry ontologies. There are a few possibilities for adding additional ORCIDs:

1. Manually add ORCID identifiers to [`extra_orcids.txt`](extra_orcids.txt)

2. Add additional contribution annotations to your favorite ontology's Wikidata page and make sure

   these contributors have ORCID identifiers in their corresponding entries. This isn't recommended, though.

3. Annotate ORCID identifiers to your favorite ontologies using structured predicates, get them released, then

   run `python update_wikidata.py` to parse all OBO ontologies with JSON releases, generate QuickStatements, then update

   Wikidata. (TODO: this could be automated)

4. Sometimes run `python push_wikidata.py` and do step 3 again to create missing Wikidata entries

## How to import ORCIDIO in your ontology

See the [tutorial](https://oboacademy.github.io/obook/howto/odk-add-orcidio-module/)

in the OBO Academy.

## Build

After installing [`robot`](https://robot.obolibrary.org), you can run the following:

```shell

pip install tox

tox

```

This is run automatically once per week via GitHub

Actions [![Update ORCID Instance Ontology](https://github.com/cthoyt/orcidio/actions/workflows/update.yml/badge.svg)](https://github.com/cthoyt/orcidio/actions/workflows/update.yml)

or can be triggered on demand (i.e., workflow dispatch).