https://github.com/ctsit/nipype-pbs-workflows

https://github.com/ctsit/nipype-pbs-workflows

hipergator reviewphilip

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• Host: GitHub
• URL: https://github.com/ctsit/nipype-pbs-workflows
• Owner: ctsit
• License: bsd-3-clause
• Created: 2014-12-23T16:37:48.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2015-06-16T18:29:35.000Z (over 9 years ago)
• Last Synced: 2023-08-19T18:13:22.128Z (over 1 year ago)
• Topics: hipergator, reviewphilip
• Language: Python
• Homepage:
• Size: 179 KB
• Stars: 3
• Watchers: 12
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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README

        
## nipype-workflows

This repository consists of neuroimaging workflows written in nipype with a focus on the Portable Batch System (PBS) job scheduler.

It provides tools and documentation to neuroscientists for using the services of UF's Research Computing (RC) group.

### Installation

In order to run the code provided in this repository the following software need to be available:

 - PBS Job scheduler

 - Required Modules:

  - python (version 2.7.6)

  - nipype (version 0.8)

  - fsl (version 5.0.5)

  - mricron (version 6/2013)

Before running the code, the required modules need to be loaded as follows:

```

module load python/2.7.6

module load nipype/0.8

module load fsl/5.0.5

module load mricron/201306

```

### Contributors

 - Philip Chase

 - Mohan Katragadda

 - Ruchi Desai

### License

New BSD License which can be found in the [LICENSE file](https://github.com/ctsit/nipype-pbs-workflows/blob/master/LICENSE)