https://github.com/cytoscape/idmapper
Identifier mapping
https://github.com/cytoscape/idmapper
identifier-mapping
Last synced: 12 months ago
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Identifier mapping
- Host: GitHub
- URL: https://github.com/cytoscape/idmapper
- Owner: cytoscape
- Created: 2016-04-28T21:59:04.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2022-01-07T02:01:57.000Z (over 4 years ago)
- Last Synced: 2024-09-13T01:58:42.486Z (almost 2 years ago)
- Topics: identifier-mapping
- Language: Java
- Size: 1.95 MB
- Stars: 2
- Watchers: 20
- Forks: 1
- Open Issues: 4
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Metadata Files:
- Readme: README.md
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README
#idmapper
BridgeDB based Identifier mapping
Version 3.6.5 - remove KEGG from MappingSource
Version 3.6.4 - added https support
This is a Cytoscape app that allows identifier mapping on tables. Once this app is installed, the table browser will respond to a right click on the column header with a pop-up menu containing the item **Map Column...**
A dialog is shown to gather the information about the species, and which columns you want to map **From** (the source) and **To** (the target). By default, multiple return values will be simplified to the first in the list, but turning off the **Force Single** checkbox will maintain all returned IDs.
Once the dialog is confirmed, a new column will be added to the Node Table containing the mapped identifiers.
This version adds support for the command dialog and CyREST access.
'{
"columnName": "name",
"forceSingle": "true",
"mapFrom": "HGNC",
"mapTo": "Ensembl",
"network": "A",
"table": "default node",
"species": "Human (Homo sapiens)"
}'