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https://github.com/dacrystal/docker-tripal
Tripal docker image
https://github.com/dacrystal/docker-tripal
Last synced: 11 days ago
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Tripal docker image
- Host: GitHub
- URL: https://github.com/dacrystal/docker-tripal
- Owner: dacrystal
- Created: 2016-09-21T07:42:39.000Z (over 8 years ago)
- Default Branch: master
- Last Pushed: 2017-04-20T05:01:19.000Z (almost 8 years ago)
- Last Synced: 2024-11-20T23:30:06.415Z (2 months ago)
- Size: 11.7 KB
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Tripal Docker Image
This image contains Tripal 2.1 & Chado 1.3. The image is based on [docker-drupal](https://github.com/samos123/docker-drupal/blob/master/README.md).
It will automatically setup the database and install a default site.
The image doesn't contain a database so you have to create a seperate database
container (which is no effort if you use the provided configuration for
*docker-compose*) and link this container or pass the database information.
## Usage
`docker-compose.yml`.
```yaml
version: '2'
services:
web:
image: dacrystal/tripal
links:
- db:postgres
volumes:
- /var/www/html/sites
- /var/www/private
environment:
- UPLOAD_LIMIT=20M
- MEMORY_LIMIT=128M
ports:
- "3000:80"
db:
image: postgres
environment:
- POSTGRES_PASSWORD=password
volumes:
- /var/lib/postgresql/data
```
You can use [Docker-Compose](https://docs.docker.com/compose/) in a directory
that contains the provided [`docker-compose.yml`](https://github.com/samos123/docker-drupal/blob/master/docker-compose.yml):
docker-compose up
This will launch a new tripal site with a default modules. If you want custom
modules, see *Customization*.
As customizations and uploads are stored you must take care of these directories
if you want to keep these:
- `/var/www/html/sites` (modules, themes, uploaded files)
- `/var/www/private` (non-public files, e.g. to store backups)
As these folders are defined as *volumes* in the sample `docker-compose.yml`,
you can easily update your container to use the latest image while preserving
any modifications with:
docker-compose pull && docker-compose up -d
## Tripal options:
- `TRIPAL_DOWNLOAD_MODULES`: additional drupal modules; e.g "tripal_analysis_blast-7.x-2.x-dev"
- `TRIPAL_GIT_CLONE_MODULES`: additional drupal modules from a git repo; e.g "https://github.com/tripal/tripal_analysis_expression.git"
- `TRIPAL_ENABLE_MODULES` : default to "tripal_genetic tripal_natural_diversity tripal_phenotype tripal_project tripal_pub tripal_stock"
## Database options(`samos123/docker-drupal`)
You can use a linked database-container with the alias `postgres` as shown
above - Drupal will be automatically configured to it. Or you use an external
database-host. Therefore pass the following environment variables to your
container:
- `DB_DRIVER`
- `DB_HOST`
- `DB_PORT`
- `DB_NAME`
- `DB_USER`
- `DB_PASS`
## Other options(`samos123/docker-drupal`)
- `VIRTUAL_HOST` - sets the `ServerName`-directive for *httpd* and *Drupal*'s
`base_url` configuration variable; handy in conjunction with
[jwilder/nginx-proxy](https://github.com/jwilder/nginx-proxy)
- if it is a comma-seperated list, the first value is used
- `SERVERNAME` - use this to explicitly set httpd's `ServerName`-directive
- if none of these both variables are given, the `/etc/hostname` will be
used
- `BASE_URL` - explicitly set the `base_url` configuration variable for
*Drupal*
- trailing slashes are not allowed
- `BASE_URL_PROTO` (default: `https://`) - if `BASE_URL` is derived from
`VIRTUAL_HOST`, this will be prefixed as protocol
- `UPLOAD_LIMIT` (default: `10M`) - sets variables for the *PHP*-interpreter
to control maximum upload sizes
- `MEMORY_LIMIT` (default: `64M`) - sets the [`memory_limit`](http://php.net/manual/en/ini.core.php#ini.memory-limit)
for the *PHP*-interpreter
- `ADMIN_USER` (default: `admin`) - sets the administrator account name when
creating a new instance
- `ADMIN_PASSWORD` - (default: `changeme`) sets the administrator password when
creating a new instance.
## Customization
See the [samos123/docker-drupal Customization](https://github.com/samos123/docker-drupal/blob/master/README.md#customization)
## Links
- Source code: [https://github.com/dacrystal/docker-tripal](https://github.com/dacrystal/docker-tripal)
- Docker Hub: [https://hub.docker.com/r/dacrystal/tripal/](https://hub.docker.com/r/dacrystal/tripal/)
- **samos123/docker-drupal** : See the [samos123/docker-drupal Credits](https://github.com/samos123/docker-drupal/blob/master/README.md#Credits)
- **erasche/docker-tripal** : See the [erasche/docker-tripal](https://github.com/erasche/docker-tripal)
# TODO #
- [ ] Include postgres server in the image.
- [ ] Only postgres should be allowed (required for installation of the
Chado Schema)
- [ ] Add docker-compose version 2 compatibility (e.g env naming on linking)
- [x] ~~Add ssh server (root:changeme)~~
- [x] ~~Use tripal `install_chado` method to install chado schema~~
- [x] ~~Steal the good parts from [erasche/docker-tripal](https://github.com/erasche/docker-tripal)~~