https://github.com/daler/gffutils
GFF and GTF file manipulation and interconversion
https://github.com/daler/gffutils
Last synced: 8 months ago
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GFF and GTF file manipulation and interconversion
- Host: GitHub
- URL: https://github.com/daler/gffutils
- Owner: daler
- License: mit
- Created: 2011-10-12T13:48:14.000Z (over 14 years ago)
- Default Branch: master
- Last Pushed: 2024-04-13T17:41:00.000Z (almost 2 years ago)
- Last Synced: 2025-05-11T08:17:22.714Z (8 months ago)
- Language: Python
- Homepage: http://daler.github.io/gffutils
- Size: 30.9 MB
- Stars: 299
- Watchers: 14
- Forks: 79
- Open Issues: 22
-
Metadata Files:
- Readme: README.rst
- License: LICENSE
Awesome Lists containing this project
- Awesome-Bioinformatics - gffutils - GFF and GTF file manipulation and interconversion. [ [web](http://daler.github.io/gffutils) ] (Next Generation Sequencing / GFF BED File Utilities)
- awesome-python-fa - gffutils - کار با فایلهای GFF/GTF برای حاشیهنویسی ژنی. (زیست شناسی و بیوتکنولوژی / کار با زمان و تقویم)
README
gffutils
========
``gffutils`` is a Python package for working with and manipulating the GFF and
GTF format files typically used for genomic annotations.
Files are loaded into a sqlite3 database, allowing much more complex
manipulation of hierarchical features (e.g., genes, transcripts, and exons)
than is possible with plain-text methods alone.
See documentation at https://daler.github.io/gffutils, and GitHub repo at
https:/github.com/daler/gffutils.