https://github.com/daler/gffutils

GFF and GTF file manipulation and interconversion
https://github.com/daler/gffutils

Last synced: 10 days ago
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GFF and GTF file manipulation and interconversion

• Host: GitHub
• URL: https://github.com/daler/gffutils
• Owner: daler
• License: mit
• Created: 2011-10-12T13:48:14.000Z (about 13 years ago)
• Default Branch: master
• Last Pushed: 2024-04-13T17:41:00.000Z (7 months ago)
• Last Synced: 2024-04-29T00:10:23.122Z (6 months ago)
• Language: Python
• Homepage: http://daler.github.io/gffutils
• Size: 30.9 MB
• Stars: 267
• Watchers: 14
• Forks: 74
• Open Issues: 17
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

• Awesome-Bioinformatics - gffutils -  GFF and GTF file manipulation and interconversion. [ [web](http://daler.github.io/gffutils) ] (Next Generation Sequencing / GFF BED File Utilities)

README

        
gffutils

========

``gffutils`` is a Python package for working with and manipulating the GFF and

GTF format files typically used for genomic annotations.

Files are loaded into a sqlite3 database, allowing much more complex

manipulation of hierarchical features (e.g., genes, transcripts, and exons)

than is possible with plain-text methods alone.

See documentation at https://daler.github.io/gffutils, and GitHub repo at

https:/github.com/daler/gffutils.