https://github.com/danderson123/snp_simulator
Simulate SNPs across a phylogenetic tree using a reference.
https://github.com/danderson123/snp_simulator
Last synced: 3 months ago
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Simulate SNPs across a phylogenetic tree using a reference.
- Host: GitHub
- URL: https://github.com/danderson123/snp_simulator
- Owner: Danderson123
- License: apache-2.0
- Created: 2023-02-24T16:22:40.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2023-02-27T11:10:27.000Z (over 2 years ago)
- Last Synced: 2025-01-17T06:44:31.386Z (5 months ago)
- Language: Python
- Homepage:
- Size: 630 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# SNP_simulator
Simulate SNPs across a phylogenetic tree from a reference.
## Installation
```
git clone https://github.com/Danderson123/SNP_simulator
cd SNP_simulator
pip install -r requirements.txt
```
## Quick start
```
python3 simulate_bacterial_genome.py --tree simulated_tree.nwk --reference GCF_001457635.1_NCTC7465_genomic.fna --output simulation.output
```