https://github.com/danko-lab/stabilityhmm

Inference of transcript stability from polyA and 5' splice site sequence elements
https://github.com/danko-lab/stabilityhmm

Last synced: 8 months ago
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Inference of transcript stability from polyA and 5' splice site sequence elements

• Host: GitHub
• URL: https://github.com/danko-lab/stabilityhmm
• Owner: Danko-Lab
• License: bsd-2-clause
• Created: 2014-10-14T16:42:44.000Z (over 11 years ago)
• Default Branch: master
• Last Pushed: 2020-06-10T15:55:07.000Z (almost 6 years ago)
• Last Synced: 2023-08-14T12:10:48.408Z (almost 3 years ago)
• Language: R
• Size: 60.5 KB
• Stars: 1
• Watchers: 22
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
stabilityHMM

============

Inference of transcript stability from polyA and 5' splice site sequence elements

Installation:

============

1) Install RGHMM package from the GitHub as the following scripts.

> git clone https://github.com/andrelmartins/QHMM.git

> cd QHMM

> R CMD INSTALL rqhmm

2) Install twoBit package from the GitHub as the following scripts

> git  clone https://github.com/andrelmartins/TwoBit.git

> cd TwoBit

> make

Notice: If you are failed to install TwoBit package, please see the reported issue at:

https://github.com/andrelmartins/TwoBit/issues/1

3) Install stabilityHMM package from the GitHub

> git clone https://github.com/Danko-Lab/stabilityHMM.git

> cd stabilityHMM

> make