https://github.com/darwinsorchid/biological-networks

[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.
https://github.com/darwinsorchid/biological-networks

html-css networks-biology ppi-networks quarto

Last synced: 9 days ago
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[R] Generating Protein-Protein Interaction Networks using R and Quarto publishing system in HTML format.

• Host: GitHub
• URL: https://github.com/darwinsorchid/biological-networks
• Owner: darwinsorchid
• Created: 2024-08-23T12:27:39.000Z (5 months ago)
• Default Branch: master
• Last Pushed: 2024-08-27T08:44:44.000Z (4 months ago)
• Last Synced: 2024-11-07T22:38:51.812Z (2 months ago)
• Topics: html-css, networks-biology, ppi-networks, quarto
• Language: HTML
• Homepage:
• Size: 2.19 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Generating Biological Networks 

## Description

A personal project exploring the world of *network theory* and *complex systems* in Biology through **protein-protein interaction** networks.

Using the **Quarto** publishing system in R studio, a few network metrics were calculated and plotted to demonstrate different properties of the network.

The respective report is available in HTML format, part of which was customized using a CSS file.

## Report Contents

* Introduction

* Results

  - Graph Visualization

  - Node Degree

  - Degree Distribution

  - Community Detection [with Louvain clustering algorithm]

  - Modularity

  - Betweenness Centrality

  - Transitivity

  - The Importance of Hubs

* Conclusion

* References

  

## Dependencies

This project was developed using the following software and R libraries:

- **R version 4.3.3**

- `ggraph`

- `tidygraph`

- `ggplot2`

- `igraph`

- `gt`