Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/data-apis/array-api-tests

Test suite for the PyData Array APIs standard
https://github.com/data-apis/array-api-tests

Last synced: 3 months ago
JSON representation

Test suite for the PyData Array APIs standard

Awesome Lists containing this project

README 

        
# Test Suite for Array API Compliance



This is the test suite for array libraries adopting the [Python Array API

standard](https://data-apis.org/array-api/latest).



Keeping full coverage of the spec is an on-going priority as the Array API evolves.

Feedback and contributions are welcome!



## Quickstart



### Setup



Currently we pin the Array API specification repo [`array-api`](https://github.com/data-apis/array-api/)

as a git submodule. This might change in the future to better support vendoring

use cases (see [#107](https://github.com/data-apis/array-api-tests/issues/107)),

but for now be sure submodules are pulled too, e.g.



```bash

$ git submodule update --init

```



To run the tests, install the testing dependencies.



```bash

$ pip install -r requirements.txt

```



Ensure you have the array library that you want to test installed.



### Specifying the array module



You need to specify the array library to test. It can be specified via the

`ARRAY_API_TESTS_MODULE` environment variable, e.g.



```bash

$ export ARRAY_API_TESTS_MODULE=array_api_strict

```



Alternately, import/define the `xp` variable in `array_api_tests/__init__.py`.



### Specifying the API version



You can specify the API version to use when testing via the

`ARRAY_API_TESTS_VERSION` environment variable, e.g.



```bash

$ export ARRAY_API_TESTS_VERSION="2023.12"

```



Currently this defaults to the array module's `__array_api_version__` value, and

if that attribute doesn't exist then we fallback to `"2021.12"`.



### Run the suite



Simply run `pytest` against the `array_api_tests/` folder to run the full suite.



```bash

$ pytest array_api_tests/

```



The suite tries to logically organise its tests. `pytest` allows you to only run

a specific test case, which is useful when developing functions.



```bash

$ pytest array_api_tests/test_creation_functions.py::test_zeros

```



## What the test suite covers



We are interested in array libraries conforming to the

[spec](https://data-apis.org/array-api/latest/API_specification/index.html).

Ideally this means that if a library has fully adopted the Array API, the test

suite passes. We take great care to _not_ test things which are out-of-scope,

so as to not unexpectedly fail the suite.



### Primary tests



Every function—including array object methods—has a respective test

method1. We use

[Hypothesis](https://hypothesis.readthedocs.io/en/latest/)

to generate a diverse set of valid inputs. This means array inputs will cover

different dtypes and shapes, as well as contain interesting elements. These

examples generate with interesting arrangements of non-array positional

arguments and keyword arguments.



Each test case will cover the following areas if relevant:



* **Smoking**: We pass our generated examples to all functions. As these

  examples solely consist of *valid* inputs, we are testing that functions can

  be called using their documented inputs without raising errors.



* **Data type**: For functions returning/modifying arrays, we assert that output

  arrays have the correct data types. Most functions

  [type-promote](https://data-apis.org/array-api/latest/API_specification/type_promotion.html)

  input arrays and some functions have bespoke rules—in both cases we simulate

  the correct behaviour to find the expected data types.



* **Shape**: For functions returning/modifying arrays, we assert that output

  arrays have the correct shape. Most functions

  [broadcast](https://data-apis.org/array-api/latest/API_specification/broadcasting.html)

  input arrays and some functions have bespoke rules—in both cases we simulate

  the correct behaviour to find the expected shapes.



* **Values**: We assert output values (including the elements of

  returned/modified arrays) are as expected. Except for manipulation functions

  or special cases, the spec allows floating-point inputs to have inexact

  outputs, so with such examples we only assert values are roughly as expected.



### Additional tests



In addition to having one test case for each function, we test other properties

of the functions and some miscellaneous things.



* **Special cases**: For functions with special case behaviour, we assert that

  these functions return the correct values.



* **Signatures**: We assert functions have the correct signatures.



* **Constants**: We assert that

  [constants](https://data-apis.org/array-api/latest/API_specification/constants.html)

  behave expectedly, are roughly the expected value, and that any related

  functions interact with them correctly.



Be aware that some aspects of the spec are impractical or impossible to actually

test, so they are not covered in the suite. 



## Interpreting errors



First and foremost, note that most tests have to assume that certain aspects of

the Array API have been correctly adopted, as fundamental APIs such as array

creation and equalities are hard requirements for many assertions. This means a

test case for one function might fail because another function has bugs or even

no implementation.



This means adopting libraries at first will result in a vast number of errors

due to cascading errors. Generally the nature of the spec means many granular

details such as type promotion is likely going to also fail nearly-conforming

functions.



We hope to improve user experience in regards to "noisy" errors in

[#51](https://github.com/data-apis/array-api-tests/issues/51). For now, if an

error message involves `_UndefinedStub`, it means an attribute of the array

library (including functions) and it's objects (e.g. the array) is missing.



The spec is the suite's source of truth. If the suite appears to assume

behaviour different from the spec, or test something that is not documented,

this is a bug—please [report such

issues](https://github.com/data-apis/array-api-tests/issues/) to us.



## Running on CI



See our existing [GitHub Actions workflow for `array-api-strict`](https://github.com/data-apis/array-api-tests/blob/master/.github/workflows/test.yml)

for an example of using the test suite on CI. Note [`array-api-strict`](https://github.com/data-apis/array-api-strict)

is an implementation of the array API that uses NumPy under the hood.



### Releases



We recommend pinning against a [release tag](https://github.com/data-apis/array-api-tests/releases)

when running on CI.



We use [calender versioning](https://calver.org/) for the releases. You should

expect that any version may be "breaking" compared to the previous one, in that

new tests (or improvements to existing tests) may cause a previously passing

library to fail.



### Configuration



#### Data-dependent shapes



Use the `--disable-data-dependent-shapes` flag to skip testing functions which have

[data-dependent shapes](https://data-apis.org/array-api/latest/design_topics/data_dependent_output_shapes.html).



#### Extensions



By default, tests for the optional Array API extensions such as

[`linalg`](https://data-apis.org/array-api/latest/extensions/linear_algebra_functions.html)

will be skipped if not present in the specified array module. You can purposely

skip testing extension(s) via the `--disable-extension` option.



#### Skip or XFAIL test cases



Test cases you want to skip can be specified in a skips or XFAILS file. The

difference between skip and XFAIL is that XFAIL tests are still run and

reported as XPASS if they pass.



By default, the skips and xfails files are `skips.txt` and `fails.txt` in the root

of this repository, but any file can be specified with the `--skips-file` and

`--xfails-file` command line flags.



The files should list the test ids to be skipped/xfailed. Empty lines and

lines starting with `#` are ignored. The test id can be any substring of the

test ids to skip/xfail.



```

# skips.txt or xfails.txt

# Line comments can be denoted with the hash symbol (#)



# Skip specific test case, e.g. when argsort() does not respect relative order

# https://github.com/numpy/numpy/issues/20778

array_api_tests/test_sorting_functions.py::test_argsort



# Skip specific test case parameter, e.g. you forgot to implement in-place adds

array_api_tests/test_add[__iadd__(x1, x2)]

array_api_tests/test_add[__iadd__(x, s)]



# Skip module, e.g. when your set functions treat NaNs as non-distinct

# https://github.com/numpy/numpy/issues/20326

array_api_tests/test_set_functions.py

```



Here is an example GitHub Actions workflow file, where the xfails are stored

in `array-api-tests.xfails.txt` in the base of the `your-array-library` repo.



If you want, you can use `-o xfail_strict=True`, which causes XPASS tests (XFAIL

tests that actually pass) to fail the test suite. However, be aware that

XFAILures can be flaky (see below, so this may not be a good idea unless you

use some other mitigation of such flakyness).



If you don't want this behavior, you can remove it, or use `--skips-file`

instead of `--xfails-file`.



```yaml

# ./.github/workflows/array_api.yml

jobs:

  tests:

    runs-on: ubuntu-latest

    strategy:

      matrix:

        python-version: ['3.8', '3.9', '3.10', '3.11']



    steps:

    - name: Checkout 

      uses: actions/checkout@v3

      with:

        path: your-array-library



    - name: Checkout array-api-tests

      uses: actions/checkout@v3

      with:

        repository: data-apis/array-api-tests

        submodules: 'true'

        path: array-api-tests



    - name: Run the array API test suite

      env:

        ARRAY_API_TESTS_MODULE: your.array.api.namespace

      run: |

        export PYTHONPATH="${GITHUB_WORKSPACE}/your-array-library"

        cd ${GITHUB_WORKSPACE}/array-api-tests

        pytest -v -rxXfE --ci --xfails-file ${GITHUB_WORKSPACE}/your-array-library/array-api-tests-xfails.txt array_api_tests/

```



> **Warning**

>

> XFAIL tests that use Hypothesis (basically every test in the test suite except

> those in test_has_names.py) can be flaky, due to the fact that Hypothesis

> might not always run the test with an input that causes the test to fail.

> There are several ways to avoid this problem:

>

> - Increase the maximum number of examples, e.g., by adding `--max-examples

>   200` to the test command (the default is `20`, see below). This will

>   make it more likely that the failing case will be found, but it will also

>   make the tests take longer to run.

> - Don't use `-o xfail_strict=True`. This will make it so that if an XFAIL

>   test passes, it will alert you in the test summary but will not cause the

>   test run to register as failed.

> - Use skips instead of XFAILS. The difference between XFAIL and skip is that

>   a skipped test is never run at all, whereas an XFAIL test is always run

>   but ignored if it fails.

> - Save the [Hypothesis examples

>   database](https://hypothesis.readthedocs.io/en/latest/database.html)

>   persistently on CI. That way as soon as a run finds one failing example,

>   it will always re-run future runs with that example. But note that the

>   Hypothesis examples database may be cleared when a new version of

>   Hypothesis or the test suite is released.



#### Max examples



The tests make heavy use

[Hypothesis](https://hypothesis.readthedocs.io/en/latest/). You can configure

how many examples are generated using the `--max-examples` flag, which

defaults to `20`. Lower values can be useful for quick checks, and larger

values should result in more rigorous runs. For example, `--max-examples

10_000` may find bugs where default runs don't but will take much longer to

run.



#### Skipping Dtypes



The test suite will automatically skip testing of inessential dtypes if they

are not present on the array module namespace, but dtypes can also be skipped

manually by setting the environment variable `ARRAY_API_TESTS_SKIP_DTYPES` to

a comma separated list of dtypes to skip. For example



```

ARRAY_API_TESTS_SKIP_DTYPES=uint16,uint32,uint64 pytest array_api_tests/

```



Note that skipping certain essential dtypes such as `bool` and the default

floating-point dtype is not supported.



## Contributing



### Remain in-scope



It is important that every test only uses APIs that are part of the standard.

For instance, when creating input arrays you should only use the [array creation

functions](https://data-apis.org/array-api/latest/API_specification/creation_functions.html)

that are documented in the spec. The same goes for testing arrays—you'll find

many utilities that parralel NumPy's own test utils in the `*_helpers.py` files.



### Tools



Hypothesis should almost always be used for the primary tests, and can be useful

elsewhere. Effort should be made so drawn arguments are labeled with their

respective names. For

[`st.data()`](https://hypothesis.readthedocs.io/en/latest/data.html#hypothesis.strategies.data),

draws should be accompanied with the `label` kwarg i.e. `data.draw(,

label=)`.



[`pytest.mark.parametrize`](https://docs.pytest.org/en/latest/how-to/parametrize.html)

should be used to run tests over multiple arguments. Parameterization should be

preferred over using Hypothesis when there are a small number of possible

inputs, as this allows better failure reporting. Note using both parametrize and

Hypothesis for a single test method is possible and can be quite useful.



### Error messages



Any assertion should be accompanied with a descriptive error message, including

the relevant values. Error messages should be self-explanatory as to why a given

test fails, as one should not need prior knowledge of how the test is

implemented.



### Generated files



Some files in the suite are automatically generated from the spec, and should

not be edited directly. To regenerate these files, run the script



    ./generate_stubs.py path/to/array-api



where `path/to/array-api` is the path to a local clone of the [`array-api`

repo](https://github.com/data-apis/array-api/). Edit `generate_stubs.py` to make

changes to the generated files.



### Release



To make a release, first make an annotated tag with the version, e.g.:



```

git tag -a 2022.01.01

```



Be sure to use the calver version number for the tag name. Don't worry too much

on the tag message, e.g. just write "2022.01.01".



Versioneer will automatically set the version number of the `array_api_tests`

package based on the git tag. Push the tag to GitHub:



```

git push --tags upstream 2022.1

```



Then go to the [tags page on

GitHub](https://github.com/data-apis/array-api-tests/tags) and convert the tag

into a release. If you want, you can add release notes, which GitHub can

generate for you.



---



1The only exceptions to having just one primary test per function are:



* [`asarray()`](https://data-apis.org/array-api/latest/API_specification/generated/signatures.creation_functions.asarray.html),

  which is tested by `test_asarray_scalars` and `test_asarray_arrays` in

  `test_creation_functions.py`. Testing `asarray()` works with scalars (and

  nested sequences of scalars) is fundamental to testing that it works with

  arrays, as said arrays can only be generated by passing scalar sequences to

  `asarray()`.



* Indexing methods

  ([`__getitem__()`](https://data-apis.org/array-api/latest/API_specification/generated/signatures.array_object.array.__getitem__.html)

  and

  [`__setitem__()`](https://data-apis.org/array-api/latest/API_specification/generated/signatures.array_object.array.__setitem__.html)),

  which respectively have both a test for non-array indices and a test for

  boolean array indices. This is because [masking is

  opt-in](https://data-apis.org/array-api/latest/API_specification/indexing.html#boolean-array-indexing)

  (and boolean arrays need to be generated by indexing arrays anyway).