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https://github.com/data2health/nlp-sandbox
Cloud-based sandbox for text analytics
https://github.com/data2health/nlp-sandbox
Last synced: 2 months ago
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Cloud-based sandbox for text analytics
- Host: GitHub
- URL: https://github.com/data2health/nlp-sandbox
- Owner: data2health
- License: mit
- Created: 2020-03-13T23:03:17.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2020-10-01T17:56:41.000Z (over 4 years ago)
- Last Synced: 2024-08-04T08:02:18.562Z (6 months ago)
- Language: HTML
- Size: 1.56 MB
- Stars: 3
- Watchers: 10
- Forks: 1
- Open Issues: 9
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# nlp-sandbox
Developing a continuous benchmarking envrionment for NLP de-id methods.
## Project vision and values
The widespread adoption of Electronic Health Records (EHRs) has enabled secondary use of EHR data for clinical research and healthcare delivery. As much of the detailed patient information is recorded in clinical narratives, unlocking information from clinical narratives and integrating such information with structured EHR data become critical for EHR-based studies.
PHI information in clinical narratives becomes a barrier in conducting EHR-based clinical research and sharing the research data across sites.
## Vision
- Create a cloud-based environment that enables the systematic validation of text analytics tools to solve specific tasks (i.e. the “NLP Sandbox”).
- Populate the “NLP Sandbox” with appropriate reference data sets to be used in shared validation tasks.
- Engages CTSA hubs to contribute tools and methods to the project and demonstrate their performance, reproducibility, and rigor in such a shared environment
## Related Cores
- Tools and Cloud Infrastructure
- Next Generation Data Sharing
- Informatics Maturity and Best Practices
## Contact person
Point person (github handle) | Site | Program Director
----------|--------------|---------------
Justin Guinney (@jguinney) | Sage Bionetworks | Melissa Haendel (@mellybelly)
## Leads
Project scientific leadership, should be 1-3 persons.
Leads (github handle) | Site
----------|--------------|
Thomas Schaffter (@tschaffter) | Sage Bionetworks
James Eddy (@jaeddy) | Sage Bionetworks
## Team members
Members (github handle) | Site
----------|--------------|
Thomas Schaffter (@tschaffter) | Sage Bionetworks
Yao Yan (@yy6linda) | Sage Bionetworks
Yooree Chae (@ychae) | Sage Bionetworks
James Eddy (@jaeddy) | Sage Bionetworks
Justin Guinney (@jguinney) | Sage Bionetworks
George Kowalski (@gkowalski) | MCW
Bradley Taylor (@btaylormcw) | MCW
Tom Dillon (@tmdillon) | WashU
## Resources
Resource | Link | Site
----------|--------------|--------------|
GitHub team | [nlp-team](https://github.com/orgs/data2health/teams/nlp-team) | CD2H
GitHub project | [data2health/projects/7](https://github.com/orgs/data2health/projects/7) | CD2H
Google folder | [NLP Sandbox](https://drive.google.com/drive/folders/1PpFItk7GNvIjbidFNiDHmOn7NHEbpHle) | CD2H
Slack channel | [CD2H workspace / nlp-sandbox](https://app.slack.com/client/T4SPTQGE7/C010044EGTW) | CD2H
Access to resources is limited to onboarded participants ([CD2H Onboarding Form](https://bit.ly/cd2h-onboarding-form)).
## Get involved
We encourage the community to get involved. Please make tickets or provide comments.
## References
1. [NLP Sandbox - CD2H Phase III Project Proposal](https://docs.google.com/document/d/1S8LAtfgU6OitcSbPlKhKtvFxcIYQ-2t9Pw4EYlSBpRg)
2. https://github.com/data2health/nlp-review