https://github.com/databio/atac_ebna2
Example ATAC-seq project
https://github.com/databio/atac_ebna2
Last synced: 5 months ago
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Example ATAC-seq project
- Host: GitHub
- URL: https://github.com/databio/atac_ebna2
- Owner: databio
- Created: 2020-04-20T15:27:36.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2020-04-22T18:03:22.000Z (about 6 years ago)
- Last Synced: 2025-09-11T10:14:44.666Z (10 months ago)
- Homepage:
- Size: 30.3 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# ATAC EBNA2 project
This repository contains an example project for use with the [PEPATAC](http://pepatac.databio.org) pipeline. It shows you how to download and process 18 ATAC-seq samples published in [GSE148396](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148396).
To see an example of how to get SRA files into fastq format, see [tutorial_setup.md](tutorial_setup.md).
For an example of how to run PEPATAC on input data *already in fastq format*, see [tutorial_basic.md](tutorial_basic.md).