https://github.com/databio/bedhost

API and UI for BEDbase
https://github.com/databio/bedhost

bed bioinformatics fastapi genomic-intervals genomics rest-api server

Last synced: 19 days ago
JSON representation

API and UI for BEDbase

• Host: GitHub
• URL: https://github.com/databio/bedhost
• Owner: databio
• License: bsd-2-clause
• Created: 2019-10-21T18:10:27.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2026-01-21T13:41:02.000Z (19 days ago)
• Last Synced: 2026-01-21T17:22:53.343Z (19 days ago)
• Topics: bed, bioinformatics, fastapi, genomic-intervals, genomics, rest-api, server
• Language: TypeScript
• Homepage: https://bedbase.org
• Size: 3.6 MB
• Stars: 2
• Watchers: 9
• Forks: 1
• Open Issues: 13
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

Awesome Lists containing this project

README

          
bedhost


[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

[![Github badge](https://img.shields.io/badge/source-github-354a75?logo=github)](https://github.com/databio/bedhost)

`bedhost` is a Python FastAPI module for the API that powers BEDbase.

It needs a path to the *bedbase configuration file*, which can be provided either via `-c`/`--config` argument or read from `$BEDBASE_CONFIG` environment variable. 

---

## Links of interest

- **Deployed public instance**: https://bedbase.org/

- **Documentation**: https://docs.bedbase.org/bedhost

- **API**: https://api.bedbase.org/

- **DEV API**: https://api-dev.bedbase.org/

- **UI**: https://bedbase.org/

- **DEV UI**: https://dev.bedbase.org/

- **Source Code**: https://github.com/databio/bedhost/

## Developer quick-start

```

source environment/production.env

BEDBASE_CONFIG=deployment/config/api.bedbase.org.yaml uvicorn bedhost.main:app --reload

```

UI development:

```terminal

export VITE_API_HOST=http://localhost:8000

```