https://github.com/databio/bedhost

API and UI for BEDbase
https://github.com/databio/bedhost

bed fastapi genomic-intervals jinja2-templates rest-api server

Last synced: 3 months ago
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API and UI for BEDbase

• Host: GitHub
• URL: https://github.com/databio/bedhost
• Owner: databio
• License: bsd-2-clause
• Created: 2019-10-21T18:10:27.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2025-04-10T04:54:17.000Z (3 months ago)
• Last Synced: 2025-04-10T05:38:47.864Z (3 months ago)
• Topics: bed, fastapi, genomic-intervals, jinja2-templates, rest-api, server
• Language: TypeScript
• Homepage: http://api.bedbase.org
• Size: 2.53 MB
• Stars: 1
• Watchers: 9
• Forks: 1
• Open Issues: 14
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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`bedhost` is a Python FastAPI module for the API that powers BEDbase.

It needs a path to the *bedbase configuration file*, which can be provided either via `-c`/`--config` argument or read from `$BEDBASE_CONFIG` environment variable. 

---

## Links of interest

- **Deployed public instance**: https://bedbase.org/

- **Documentation**: https://docs.bedbase.org/bedhost

- **API**: https://api.bedbase.org/

- **DEV API**: https://api-dev.bedbase.org/

- **UI**: https://bedbase.org/

- **DEV UI**: https://dev.bedbase.org/

- **Source Code**: https://github.com/databio/bedhost/

## Developer quick-start

```

source environment/production.env

BEDBASE_CONFIG=deployment/config/api.bedbase.org.yaml uvicorn bedhost.main:app --reload

```

UI development:

```terminal

export VITE_API_HOST=http://localhost:8000

```