https://github.com/databio/pypiper

Python toolkit for building restartable pipelines
https://github.com/databio/pypiper

bioinformatics bioinformatics-pipeline pipeline python python-toolkit

Last synced: 9 months ago
JSON representation

Python toolkit for building restartable pipelines

• Host: GitHub
• URL: https://github.com/databio/pypiper
• Owner: databio
• License: bsd-2-clause
• Created: 2015-03-16T16:09:41.000Z (almost 11 years ago)
• Default Branch: master
• Last Pushed: 2025-02-25T21:12:46.000Z (10 months ago)
• Last Synced: 2025-03-28T17:07:38.901Z (9 months ago)
• Topics: bioinformatics, bioinformatics-pipeline, pipeline, python, python-toolkit
• Language: Python
• Homepage: http://pypiper.databio.org
• Size: 1.63 MB
• Stars: 44
• Watchers: 15
• Forks: 9
• Open Issues: 56
• Metadata Files:
  • Readme: README.md
  • Contributing: docs/contributing.md
  • License: LICENSE.txt
  • Support: docs/support.md

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README

          


# Pypiper

[![Documentation Status](https://readthedocs.org/projects/pypiper/badge/?version=latest)](http://pypiper.readthedocs.org/en/latest/?badge=latest)

[![Build Status](https://github.com/databio/pypiper/actions/workflows/run-pytest.yml/badge.svg)](https://github.com/databio/pypiper/actions/workflows/run-pytest.yml)

[![PEP compatible](https://pepkit.github.io/img/PEP-compatible-green.svg)](http://pepkit.github.io)

[![pypi-badge](https://img.shields.io/pypi/v/piper)](https://pypi.org/project/piper)

[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

A lightweight python toolkit for gluing together restartable, robust shell pipelines. Learn more in the [documentation](http://pypiper.databio.org).