https://github.com/datajoint/datajoint-matlab
Relational data pipelines for the science lab
https://github.com/datajoint/datajoint-matlab
Last synced: 2 months ago
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Relational data pipelines for the science lab
- Host: GitHub
- URL: https://github.com/datajoint/datajoint-matlab
- Owner: datajoint
- License: mit
- Created: 2012-09-19T03:46:15.000Z (almost 13 years ago)
- Default Branch: master
- Last Pushed: 2023-07-14T11:59:28.000Z (almost 2 years ago)
- Last Synced: 2025-04-05T19:51:15.404Z (3 months ago)
- Language: MATLAB
- Homepage:
- Size: 5.16 MB
- Stars: 42
- Watchers: 25
- Forks: 39
- Open Issues: 62
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE.txt
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README
[](https://www.mathworks.com/matlabcentral/fileexchange/63218-datajoint)
# Welcome to DataJoint for MATLAB!
DataJoint for MATLAB is a high-level programming interface for relational databases designed to support data processing chains in science labs. DataJoint is built on the foundation of the relational data model and prescribes a consistent method for organizing, populating, and querying data.
For more information, see our
[general DataJoint docs](https://datajoint.com/docs/) and
[DataJoint MATLAB docs](https://datajoint.com/docs/additional-resources/).
## For Developers: Running Tests Locally
Click to expand details
+ Create an `.env` with desired development environment values e.g.
``` sh
MATLAB_USER=rguzman
MATLAB_LICENSE=IyBCRUd... # For image usage instructions see https://github.com/guzman-raphael/matlab, https://hub.docker.com/r/raphaelguzman/matlab
MATLAB_VERSION=R2019a
MATLAB_HOSTID=XX:XX:XX:XX:XX:XX
MATLAB_UID=1000
MATLAB_GID=1000
MYSQL_TAG=5.7
MINIO_VER=RELEASE.2022-01-03T18-22-58Z
```
+ `cp local-docker-compose.yaml docker-compose.yaml`
+ `docker-compose up` (Note configured `JUPYTER_PASSWORD`)
+ Select a means of running MATLAB e.g. Jupyter Notebook, GUI, or Terminal (see bottom)
+ Add `tests` directory to path e.g. in MATLAB, `addpath('tests')`
+ Run desired tests. Some examples are as follows:
| Use Case | MATLAB Code |
| ---------------------------- | ------------------------------------------------------------------------------ |
| Run all tests | `run(Main)` |
| Run one class of tests | `run(TestTls)` |
| Run one specific test | `runtests('TestTls/TestTls_testInsecureConn')` |
| Run tests based on test name | `import matlab.unittest.TestSuite;`
`import matlab.unittest.selectors.HasName;`
`import matlab.unittest.constraints.ContainsSubstring;`
`suite = TestSuite.fromClass(?Main, ... `
`HasName(ContainsSubstring('Conn')));`
`run(suite)`|
### Launch Jupyter Notebook
+ Navigate to `localhost:8888`
+ Input Jupyter password
+ Launch a notebook i.e. `New > MATLAB`
### Launch MATLAB GUI (supports remote interactive debugger)
+ Shell into `datajoint-matlab_app_1` i.e. `docker exec -it datajoint-matlab_app_1 bash`
+ Launch Matlab by running command `matlab`
### Launch MATLAB Terminal
+ Shell into `datajoint-matlab_app_1` i.e. `docker exec -it datajoint-matlab_app_1 bash`
+ Launch Matlab with no GUI by running command `matlab -nodisplay`