https://github.com/daviddao/metabolism

https://github.com/daviddao/metabolism

Last synced: about 1 month ago
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• Host: GitHub
• URL: https://github.com/daviddao/metabolism
• Owner: daviddao
• License: mit
• Created: 2015-10-20T16:48:10.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2015-10-20T16:52:44.000Z (about 9 years ago)
• Last Synced: 2024-05-01T20:25:44.680Z (7 months ago)
• Language: Shell
• Homepage:
• Size: 96.7 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# metabolism

## Vagrant Environment for CellProfiler

### Setup

### Install dependencies

- Install [Vagrant](https://www.vagrantup.com/)

- Install [VirtualBox](https://www.virtualbox.org/wiki/Downloads)

### Clone this repository and call vagrant up 

1. ```vagrant up``` (This might take couple of minutes)

2. If you want to install CellProfiler Analyst, set the analyst variable in the Vagrantfile to true

### Work with the environment

#### Synchronise inside vagrant-cpa folder

The current folder will be synched with /vagrant on the virtual machine

#### SSH into the virtual machine

We can now login via SSH (password is vagrant)

```

$ ssh -X -p 2222 vagrant@localhost 

``` 

You can now call i.e. CellProfiler Analyst with 

```

$ run

```

And cd into the folder with

```

$ cpa

```