https://github.com/daviddao/vagrant-cpa

Vagrant environment for CellProfiler Analyst and CellProfiler
https://github.com/daviddao/vagrant-cpa

Last synced: about 1 month ago
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Vagrant environment for CellProfiler Analyst and CellProfiler

• Host: GitHub
• URL: https://github.com/daviddao/vagrant-cpa
• Owner: daviddao
• Created: 2015-10-14T20:13:23.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2015-10-21T20:33:13.000Z (about 9 years ago)
• Last Synced: 2024-05-01T20:25:50.448Z (7 months ago)
• Homepage:
• Size: 207 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Vagrant Environment for CellProfiler

## Setup

### Install dependencies

- Install [Vagrant](https://www.vagrantup.com/)

- Install [VirtualBox](https://www.virtualbox.org/wiki/Downloads)

### Clone this repository and call vagrant up

1. ```git clone https://github.com/daviddao/vagrant-cpa```

2. ```cd vagrant-cpa```

3. ```vagrant up``` (This might take couple of minutes)

### Work with the environment

#### Synchronise inside vagrant-cpa folder

The current folder vagrant-cpa will be synched with /vagrant on the virtual machine

- ```git clone https://github.com/CellProfiler/CellProfiler``` (Working with Cellprofiler)

- ```git clone https://github.com/CellProfiler/CellProfiler-Analyst``` (Working with Cellprofiler Analyst)

#### SSH into the virtual machine

We can now login via SSH (password is vagrant)

```

ssh -X -p 2222 vagrant@localhost 

``` 

You can now call i.e. CellProfiler Analyst with 

```

python /Vagrant/CellProfiler-Analyst/CellProfiler-Analyst.py

```