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https://github.com/daylily-informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
https://github.com/daylily-informatics/daylily
aws bioinformatics bioinformatics-pipeline budgeting cwl ec2 ephemeral genomic-data-analysis giab human-genome informatics ngs parallel-cluster scalable scaling slurm snakemake snv-call wgs
Last synced: about 9 hours ago
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A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
- Host: GitHub
- URL: https://github.com/daylily-informatics/daylily
- Owner: Daylily-Informatics
- License: gpl-3.0
- Created: 2023-04-29T21:51:19.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-11-10T09:14:32.000Z (5 days ago)
- Last Synced: 2024-11-10T09:31:56.256Z (5 days ago)
- Topics: aws, bioinformatics, bioinformatics-pipeline, budgeting, cwl, ec2, ephemeral, genomic-data-analysis, giab, human-genome, informatics, ngs, parallel-cluster, scalable, scaling, slurm, snakemake, snv-call, wgs
- Language: WDL
- Homepage: http://daylilyinformatics.com
- Size: 293 MB
- Stars: 18
- Watchers: 7
- Forks: 0
- Open Issues: 25
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Metadata Files:
- Readme: README.md
- License: LICENSE