https://github.com/dbbrandt/tooluniverse-cli
https://github.com/dbbrandt/tooluniverse-cli
Last synced: 2 months ago
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- Host: GitHub
- URL: https://github.com/dbbrandt/tooluniverse-cli
- Owner: dbbrandt
- License: mit
- Created: 2025-04-03T01:35:35.000Z (2 months ago)
- Default Branch: master
- Last Pushed: 2025-04-03T02:01:21.000Z (2 months ago)
- Last Synced: 2025-04-03T02:34:02.307Z (2 months ago)
- Language: Python
- Size: 0 Bytes
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
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README
# ToolUniverse CLI
A powerful, enhanced command-line interface for ToolUniverse - a collection of 214+ biomedical tools designed for accessing biomedical data from multiple sources including FDA Drug Label data, OpenTargets, and Monarch Initiative.
## Features
- **Discover Tools**: Browse and search through hundreds of biomedical tools
- **Rich Output Formats**: View results in nicely formatted text tables or structured JSON
- **Category Management**: Easily filter tools by category (FDA, OpenTarget, Monarch)
- **Case-Insensitive Search**: Find tools regardless of capitalization
- **Detailed Documentation**: Get comprehensive information about tool parameters
- **Command Completion**: Bash/Zsh completion for commands and options
- **Visualization**: Format results for easier interpretation
## Installation
```bash
pip install tooluniverse-cli
```
## Usage
### List available tools
```bash
# List all tools
toolu list
# List tools by category
toolu list --category monarch
# Output as JSON
toolu list --format json
```
### Search for tools
```bash
# Search for tools matching a string
toolu search "drug abuse"
# Filter search by category
toolu search "phenotype" --category monarch
# Case-sensitive search
toolu search "HPO" --case-sensitive
```
### Get tool information
```bash
# Get detailed information about a specific tool
toolu info get_drug_names_by_abuse_info
```
### Call a tool
```bash
# Call a tool with arguments
toolu call get_drug_names_by_abuse_info abuse_type="misuse"
```
## Why a separate CLI?
This CLI builds on the foundation of ToolUniverse, offering enhanced usability, improved output formatting, and additional features while maintaining complete compatibility with the underlying ToolUniverse library.
## Requirements
- Python 3.8+
- ToolUniverse library
- Click
- Rich (for enhanced terminal output)
- Tabulate (for table formatting)
## License
MIT
## Contributing
Contributions are welcome! Please feel free to submit a Pull Request.