https://github.com/ddomingof/pubmed2pdf

A Python package to download full article PDFs from OA publications
https://github.com/ddomingof/pubmed2pdf

articles-google-scholar open-access pdf pubmed scientific-literature scientific-publications

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A Python package to download full article PDFs from OA publications

• Host: GitHub
• URL: https://github.com/ddomingof/pubmed2pdf
• Owner: ddomingof
• License: mit
• Created: 2019-07-18T07:25:37.000Z (over 5 years ago)
• Default Branch: master
• Last Pushed: 2024-07-24T15:31:39.000Z (4 months ago)
• Last Synced: 2024-09-26T02:10:11.845Z (about 2 months ago)
• Topics: articles-google-scholar, open-access, pdf, pubmed, scientific-literature, scientific-publications
• Language: Python
• Homepage:
• Size: 32.2 KB
• Stars: 35
• Watchers: 3
• Forks: 14
• Open Issues: 1
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

Awesome Lists containing this project

README

        
PubMed2PDF

==========

A Python package to download PDFs from OA publications in PubMed. The underlying code is forked from

https://github.com/billgreenwald/Pubmed-Batch-Download. Downloaded files are located  by default in your personal folder under the 'pubmed2pdf' directory.

Installation

------------

``pubmed2pdf`` can be installed from `PyPI `_

with the following command in your terminal:

.. code-block:: sh

    $ python3 -m pip install pubmed2pdf

The latest code can be installed from `GitHub `_

with:

.. code-block:: sh

    $ python3 -m pip install git+https://github.com/ddomingof/PubMed2PDF.git

For developers, the code can be installed with:

.. code-block:: sh

    $ git clone https://github.com/ddomingof/PubMed2PDF.git

    $ cd PubMed2PDF

    $ python3 -m pip install -e .

How to Use

----------

PubMed2PDF works by simply typing the list of PubMed identifiers in your command line interface or reading them from a

file.

Example from file:

.. code-block:: sh

    $ python3 -m pubmed2pdf pdf --pmidsfile="/my/path/to/the/file"

.. code-block:: sh

    $ python3 -m pubmed2pdf pdf --pmids="123, 1234, 12345"

Run the help command to see all functionalities

.. code-block:: sh

    $ python3 -m pubmed2pdf pdf --help