Ecosyste.ms: Awesome

An open API service indexing awesome lists of open source software.

Awesome Lists | Featured Topics | Projects

https://github.com/decisionpatterns/tidyimpute


https://github.com/decisionpatterns/tidyimpute

Last synced: about 2 months ago
JSON representation

Awesome Lists containing this project

README 

        

## tidyimpute  



> **Impute the tidyverse way** 



![](https://img.shields.io/cran/v/tidyimpute.svg)  

![](https://img.shields.io/cran/l/tidyimpute.svg)  

[![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)

[![Downloads](https://cranlogs.r-pkg.org/badges/tidyimpute?color=brightgreen)](https://www.r-pkg.org/pkg/tidyimpute)

[![](http://cranlogs.r-pkg.org/badges/grand-total/tidyimpute)](https://cran.rstudio.com/web/packages/tidyimpute/index.html)



**tidyimpute** is tidtverse/dplyr compliant toolkit for imputing missing 

values (NA) values in list-like and table-like structures including data.tables.

It had two goals: 1) extend existing `na.*` functions from the stats packages 

and 2) provide **dplyr**/**tidyverse** compliant methods for tables and lists. 



This package is based on the handy **na.tools** package which provides tools 

for working with missing values in vectors.



## Feature List

 

 * Over **80** functions for imputi missing values (See [#Function List] below.) 

 * **dplyr**/**tidyverse** compliant inteface:

   * `impute_*` family of functions for table- or list-based imputations.

   * `impute_*_at`, `impute_*_all` and `impute_*_if` functions 

 * Uses the **na.tools* package to ensure

   * Type/class and length-safe replacement. (**tidyimport** will never change 

     produce an object with a different length/nrow or type/class of its target.)

 * General imputation methods

   * Generic imputation: `impute`, `impute_at`, `impute_all`, `impute_if`

 * Specialized imputation methods

   * Common imputations for:

      * constants: `0`, `-Inf`, `Inf`

      * univariate, commutative summary functions: `mean`, `median`, `max`, `min`, `zero`

      * (Coming Soon) univariate, non-commutive/ordered/time-series data: `loess`, `locf`, `locb` 

      * (Coming Soon) model-based imputation

   * Support for recursive (lists and table-like structures)

   * Support for `tibble`

   * Support for `data.table`

  * Four extensible types of imputations



### Upcoming features



 * recall/track which values have been replaced

 * `by-group` calculations

 * Time-series/ordered/non-commutative methods

 * Model-based imputation 

   - Model-based + by-groups

   



## Installation



### Github (Development Version)



    library(devtools)

    install_github( "decisionpatterns/tidyimport")

    

    

### CRAN 



    R> install.packages("tidyimpute")



## Coming Soon ...



* Impute by model

* Memorable imputing

  



## Function List 



There are four types of imputation methods. They are distinguished by

how the replacement values are calculated. Each is described below as well as 

describing each of the methods used.



**Constants**



In "constant" imputation methods, missing values are replaced by an 

*a priori* selected constant value. The vector containingmissing values 

is not used to calculate the replacement value. These take the form: `na.fun(x, ...)`



 * `impute_zero` - 0 

 * `impute_inf` / `impute_neginf` - Inf/-Inf

 * `impute_constant` - Impute with a constant

 



**Univariate**



(Impute using function(s) of the target variable; When imputing in a table this 

is also called *column-based imputation* since the values used to derive the 

imputed come from the single column alone.)



In "univariate" replacement methods, values are calculated using 

only the target vector, ie the one containing the missing values. The functions 

for performing the imputation are nominally univariate summary functions. 

Generally, the ordering of the vector does not affect imputed values. In general,

one value is used to replace all missing values (`NA`) for a variable.



 * `impute_max` - maximum  

 * `impute_minimum` - minumum 

 * `impute_mean` - mean 

 * `impute_median` - median value

 * `impute_quantile` - quantile value

 * `impute_sample` - randomly sampled value via bootstrap.



**Ordered Univariate (Coming Soon)** 



(Impute using function(s) of the target variable. Variable ordering relevant. 

This is a super class of the previous **column-based imputation**.)



In "ordered univariate" methods, replacement valuse are calculated

from the vector that is assumed to be ordered. These types are very

often used with **time-series** data. (Many of these functions are taken from 

or patterned after functions in the **zoo** package.)



 * `impute_loess` - loess smoother, assumes values are ordered

 * `impute_locf` - last observation carried forward, assumes ordered 

 * `impute_nocb` - next observation carried backwards, assumes ordered



 

 

**Multivariate (Coming Soon)**



(Impute with multiple variables from the same observation. In tables, this is

also called **row-based imputation** because imputed values derive from other 

measurement for the same observation. )



In "Multivariate" imputation, any value from the same row (observation) can be 

used to derive the replacement value. This is generally implemented as a model 

traing from the data with `var ~ ...`



 * `impute_fit`,`impute_predict` - use a model 

 * `impute_by_group` - use by-group imputation



**Generalized (Coming Soon)** 



(Impute with column and rows.)



 

**Future:**



 * `unimpute`/`impute_restore` - restore NAs to the vector; remembering

    replacement

 * `impute_toggle` - toggle between `NA` and replacement values



## Examples



    tbl <- data.frame( col_1 = letters[1:3], col_2=c(1,NA_real_,3), col_3=3:1)

     

    impute( tbl, 2) 

    impute_mean( tbl )