https://github.com/deepomicslab/SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
https://github.com/deepomicslab/SpecHLA

allelic-imbalance cancer genotype-frequency haplotype hla-sequence hla-typing human-leukocyte-antigens immunity local-assembly loh loss-of-heterozygosity nanopore pacbio-data phase reads-binning

Last synced: about 1 year ago
JSON representation

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

• Host: GitHub
• URL: https://github.com/deepomicslab/SpecHLA
• Owner: deepomicslab
• License: mit
• Created: 2021-05-07T10:38:02.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2024-05-22T10:09:39.000Z (almost 2 years ago)
• Last Synced: 2024-05-22T15:31:46.693Z (almost 2 years ago)
• Topics: allelic-imbalance, cancer, genotype-frequency, haplotype, hla-sequence, hla-typing, human-leukocyte-antigens, immunity, local-assembly, loh, loss-of-heterozygosity, nanopore, pacbio-data, phase, reads-binning
• Language: C++
• Homepage:
• Size: 156 MB
• Stars: 22
• Watchers: 3
• Forks: 9
• Open Issues: 6
• Metadata Files:
  • Readme: README.MD
  • License: License

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• awesome-linked-reads - SpecHLA - commit/deepomicslab/SpecHLA?label=%20) (Tools)
• awesome-vdj - **SpecHLA** - A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read...<br>[PubMed](https://pubmed.ncbi.nlm.nih.gov/37714157/) · 🪝 [11](https://www.semanticscholar.org/paper/78feeabf537fe7503ff5fe2421b2668f635fa504) · ⭐ [53](https://github.com/deepomicslab/SpecHLA/stargazers) · `C++` (🧬 HLA Analysis / HLA Typing)