https://github.com/dellytools/svprops

Computes various SV statistics
https://github.com/dellytools/svprops

delly delly-users sv-statistics

Last synced: 7 months ago
JSON representation

Computes various SV statistics

• Host: GitHub
• URL: https://github.com/dellytools/svprops
• Owner: dellytools
• License: bsd-3-clause
• Created: 2015-05-29T07:07:11.000Z (about 11 years ago)
• Default Branch: main
• Last Pushed: 2023-10-12T13:08:56.000Z (almost 3 years ago)
• Last Synced: 2023-10-13T10:48:50.506Z (almost 3 years ago)
• Topics: delly, delly-users, sv-statistics
• Language: C++
• Size: 56.6 KB
• Stars: 14
• Watchers: 3
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
SV Properties

=============

Computes various SV statistics from an input Delly VCF file.

Installation

------------

`git clone --recursive https://github.com/dellytools/svprops.git`

`cd svprops/`

`make all`

Usage

-----

`./src/svprops [sv.vcf|sv.bcf|sv.vcf.gz] > sv.tab`

`./src/sampleprops [sv.vcf|sv.bcf|sv.vcf.gz] > sample.tab`

Plotting

--------

`Rscript R/svprops.R sv.tab`

`Rscript R/svprops.R sample.tab`