https://github.com/devrandom/nanotools
GROMACS to Blender script, and maybe more in the future
https://github.com/devrandom/nanotools
Last synced: 7 months ago
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GROMACS to Blender script, and maybe more in the future
- Host: GitHub
- URL: https://github.com/devrandom/nanotools
- Owner: devrandom
- Created: 2010-04-21T05:06:22.000Z (about 15 years ago)
- Default Branch: master
- Last Pushed: 2010-04-23T22:39:51.000Z (about 15 years ago)
- Last Synced: 2024-10-16T09:58:48.366Z (8 months ago)
- Language: Python
- Homepage:
- Size: 94.7 KB
- Stars: 5
- Watchers: 4
- Forks: 2
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
Instructions:
=============
* Copy proteindb.py to ~/.blender/scripts
* Create a directory for per-frame pdb files and name it the same as the structure (e.g. "c60")
* Each per-frame pdb file should be named with the frame number and ".pdb" extension. e.g. "1.pdb" through "999.pdb" and placed in the "c60" directory
* Run the script, choose your structure file (e.g. "c60.pdb")
* Advancing the frames will animate the structure
* To create the pdb frames from GROMACS, use the trjconv program:
trjconv -s -f traj.trr -o .pdb -sep