https://github.com/dfornika/parse-run-summary
https://github.com/dfornika/parse-run-summary
Last synced: 3 months ago
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- Host: GitHub
- URL: https://github.com/dfornika/parse-run-summary
- Owner: dfornika
- Created: 2019-01-17T18:22:24.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2019-01-28T00:10:01.000Z (over 6 years ago)
- Last Synced: 2025-01-24T23:48:44.063Z (4 months ago)
- Language: Python
- Size: 18.6 KB
- Stars: 0
- Watchers: 2
- Forks: 1
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
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README
[](https://travis-ci.org/dfornika/parse-run-summary)
# parse-run-summary
See `data/summary.txt` for typical input file
`parse_read_summary()` returns:
```
[
{
"level": "Read 1",
"yield": 4.23,
"projected_yield": 4.23,
"aligned": 0.98,
"error_rate": 1.42,
"intensity_c1": 110,
"percent_greater_than_q30": 81.74
},
{
"level": "Read 2 (I)",
...
},
...
]
```
`parse_read_summary_detail()` returns:
```
{
"read_1": [
{
"lane": 1,
"surface": "-",
"tiles": 28,
"density": {
"value": 884,
"error": 32
},
"cluster_pf": {
"value": 87.29,
"error": 1.32
},
"legacy_phasing_rate": 0.142,
"legacy_prephasing_rate": 0.159,
"phasing_slope": null,
"phasing_offset": null,
"prephasing_slope": null,
"prephasing_offset": null,
"reads": 16.14,
"reads_pf": 14.10,
"percent_greater_than_q30": 81.74,
"yield": 4.23,
"cycles_error": 301,
"aligned": {
"value": 0.98,
"error": 0.05
},
"error": {
"value": ,
"error":
},
"error_35": {
"value": ,
"error":
},
"error_75": {
"value": ,
"error":
},
"error_100": {
"value": ,
"error":
},
"intensity_c1": {
"value": ,
"error":
}
},
{
"lane":
...
}
...
]
"read_2_i": [
{
...
}
...
],
"read_3_i": [
{
...
}
...
],
"read_4": [
{
...
}
...
]
}
```