https://github.com/dhimmel/doaf

Processing data from DOAF, the Disease Ontology Annotation Framework
https://github.com/dhimmel/doaf

association diseases doaf generif genes hetionet rephetio

Last synced: 30 days ago
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Processing data from DOAF, the Disease Ontology Annotation Framework

• Host: GitHub
• URL: https://github.com/dhimmel/doaf
• Owner: dhimmel
• Created: 2015-07-12T23:32:29.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2016-03-26T22:30:56.000Z (over 8 years ago)
• Last Synced: 2024-05-02T06:00:19.042Z (6 months ago)
• Topics: association, diseases, doaf, generif, genes, hetionet, rephetio
• Language: Jupyter Notebook
• Size: 8.17 MB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Extracting disease–gene associations from DOAF

[DOAF](http://doa.nubic.northwestern.edu/pages/search.php) is a resource that extracts functional disease–gene associations from GeneRIF [[ref](http://doi.org/10.1371/journal.pone.0049686 "Xu et al (2012) A Framework for Annotating Human Genome in Disease Context")]. We're [using the resource](http://doi.org/10.15363/thinklab.d94 "Thinklab discussion: Functional disease annotations for genes using DOAF") in rephetio, our network for drug repurposing. This repository extracts associations for the diseases and genes in rephetio.

[`doaf.ipynb`](doaf.ipynb) processes the DOAF downloads and outputs user-friendly TSVs to [`data`](data).

## License

Please contact the DOAF creators for the licensing of any DOAF content or derivatives. All original content in this repository is licensed under [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "CC0 1.0 Universal: Public Domain Dedication").