https://github.com/dhimmel/drugcentral
Converting DrugCentral data to Rephetio identifiers
https://github.com/dhimmel/drugcentral
compounds data disease drugcentral drugs hetionet indications mappings pharmacologic-class rephetio tsv
Last synced: 8 months ago
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Converting DrugCentral data to Rephetio identifiers
- Host: GitHub
- URL: https://github.com/dhimmel/drugcentral
- Owner: dhimmel
- Created: 2016-03-18T20:32:52.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2017-03-09T19:27:30.000Z (over 8 years ago)
- Last Synced: 2025-01-28T23:50:07.964Z (10 months ago)
- Topics: compounds, data, disease, drugcentral, drugs, hetionet, indications, mappings, pharmacologic-class, rephetio, tsv
- Language: Jupyter Notebook
- Homepage: https://doi.org/10.15363/thinklab.d186
- Size: 558 KB
- Stars: 4
- Watchers: 2
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Processing DrugCentral data
This repository processes the [DrugCentral](http://datascience.unm.edu/drugdb/ "DrugCentral database at UNM") data available at [`olegursu/drugtarget`](https://github.com/olegursu/drugtarget). Identifiers are converted to the vocabularies used in [rephetio](http://doi.org/10.15363/thinklab.4), our drug repurposing network.
# Execution
[`drugcentral-to-rephetio.ipynb`](drugcentral-to-rephetio.ipynb) processes DrugCentral datasets for inclusion into rephetio. Data is read from `drugtarget` (submodule linked to `olegursu/drugtarget`), processed, and then saved to [`rephetio`](rephetio).
## License
All original content is licensed as [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/). DrugCentral data is [released as CC BY 4.0](https://github.com/olegursu/drugtarget/blob/master/LICENSE). Reuse of any DrugCentral data or derivatives hosted in this repository requires attributing DrugCentral.