https://github.com/dhimmel/het.io-dag-pycode
Python Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)
https://github.com/dhimmel/het.io-dag-pycode
hetio hetio-dag hetnets plos-computational-biology
Last synced: about 1 year ago
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Python Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)
- Host: GitHub
- URL: https://github.com/dhimmel/het.io-dag-pycode
- Owner: dhimmel
- Created: 2020-09-10T13:53:57.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2020-10-17T16:02:11.000Z (over 5 years ago)
- Last Synced: 2025-01-28T23:50:07.739Z (over 1 year ago)
- Topics: hetio, hetio-dag, hetnets, plos-computational-biology
- Language: Python
- Homepage: https://doi.org/10.1371/journal.pcbi.1004259
- Size: 14.6 KB
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# Python Code for Hetio Disease-Gene Prediction Study
This repository contains a portion of the Python code related to the study:
> **Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes**
Daniel S. Himmelstein, Sergio E. Baranzini
*PLOS Computational Biology* (2015-07-09)
DOI: [10.1371/journal.pcbi.1004259](https://doi.org/10.1371/journal.pcbi.1004259) · PMID: [26158728](https://www.ncbi.nlm.nih.gov/pubmed/26158728) · PMCID: [PMC4497619](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497619)
See also for Python code related to this study.
## History
This repository originally used mercurial and was hosted on BitBucket at `https://bitbucket.org/dhimmel/pyhetio`.
Unfortunately, BitBucket [deleted](https://community.atlassian.com/t5/Bitbucket-articles/What-to-do-with-your-Mercurial-repos-when-Bitbucket-sunsets/ba-p/1155380) mercurial repos in 2020 without an automated migration path.
On 2020-09-10, dhimmel realized this source code was no longer online.
The repo could not be retrieved from BitBucket, but dhimmel had a local copy in `~/Documents/serg/gene-disease-hetnet/pyhetio`.
Using the [hg-git](https://hg-git.github.io/) mercurial plugin, dhimmel pushed the repo to .
The extent this python code was used to extract the network-based features for the study is unknown.
It's uploaded to GitHub for archiving and historical purposes.
This code predates the dedicated hetnetpy Python package at https://github.com/hetio/hetnetpy.
Much of this codebase was migrated to that project.