https://github.com/dhimmel/het.io-dag-rcode
R Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)
https://github.com/dhimmel/het.io-dag-rcode
hetio hetio-dag hetnets plos-computational-biology
Last synced: about 1 year ago
JSON representation
R Code for Hetio Disease-Gene Prediction Study (PLOS Comp Bio, 2015)
- Host: GitHub
- URL: https://github.com/dhimmel/het.io-dag-rcode
- Owner: dhimmel
- Created: 2020-09-10T13:03:16.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2020-09-10T14:06:33.000Z (over 5 years ago)
- Last Synced: 2025-01-28T23:50:07.617Z (over 1 year ago)
- Topics: hetio, hetio-dag, hetnets, plos-computational-biology
- Language: R
- Homepage: https://doi.org/10.1371/journal.pcbi.1004259
- Size: 205 KB
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# R Code for Hetio Disease-Gene Prediction Study
This repository contains R code for the study:
> **Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes**
Daniel S. Himmelstein, Sergio E. Baranzini
*PLOS Computational Biology* (2015-07-09)
DOI: [10.1371/journal.pcbi.1004259](https://doi.org/10.1371/journal.pcbi.1004259) · PMID: [26158728](https://www.ncbi.nlm.nih.gov/pubmed/26158728) · PMCID: [PMC4497619](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4497619)
## Other resources
Datasets related to this study are available at .
Predictions from this study can be viewed at .
Python code related to this study is available at .
## Documentation
This repository is provided for historical and archiving purposing.
There is not much documentation on how to use the code.
We are happy address specific questions via GitHub Issues.
## History
This repository originally used mercurial and was hosted on BitBucket at `https://bitbucket.org/dhimmel/rhetio`.
Unfortunately, BitBucket [deleted](https://community.atlassian.com/t5/Bitbucket-articles/What-to-do-with-your-Mercurial-repos-when-Bitbucket-sunsets/ba-p/1155380) mercurial repos in 2020 without an automated migration path.
On 2020-09-10, dhimmel realized this source code was no longer online.
The repo could not be retrieved from BitBucket, but dhimmel had a local copy.
The local copy matched the version archived by [Software Heritage](https://archive.softwareheritage.org/swh:1:dir:ba7e1b33e1a615b2d8e42b179e82568166e463c4;origin=https://bitbucket.org/dhimmel/rhetio;visit=swh:1:snp:1a4eadb899ff36036b41d3112cff08d7e2d3fabb;anchor=swh:1:rev:314c83bdf3012973d526fd02faa2e9bd3d1b261c;path=//).
Using the [hg-git](https://hg-git.github.io/) mercurial plugin, dhimmel pushed the repo to .
The local repo was dirty, so dhimmel [committed](https://github.com/dhimmel/het.io-dag-rcode/commit/952bd5ccc0aebff3f4ca887babfe4404f15af8bd) and [reverted](https://github.com/dhimmel/het.io-dag-rcode/commit/e1b05928a4e7fbc5ac63abbc551b28d33075752f) those changes.
Going forward the plan is to switch to using git to manage this repository.