https://github.com/dhimmel/het.io-rep-guides

Neo4j Browser Guides for Project Rephetio Predictions
https://github.com/dhimmel/het.io-rep-guides

asciidoc guides hetionet neo4j neo4j-guides rephetio

Last synced: 23 days ago
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Neo4j Browser Guides for Project Rephetio Predictions

• Host: GitHub
• URL: https://github.com/dhimmel/het.io-rep-guides
• Owner: dhimmel
• Created: 2016-06-16T14:03:13.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2017-09-18T18:57:47.000Z (over 7 years ago)
• Last Synced: 2024-10-15T15:09:04.877Z (2 months ago)
• Topics: asciidoc, guides, hetionet, neo4j, neo4j-guides, rephetio
• Language: Jupyter Notebook
• Homepage: https://neo4j.het.io
• Size: 122 MB
• Stars: 1
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Neo4j Guides for Project Rephetio Predictions

This repository creates HTML guides which can be played in the Neo4j Browser. Each guide details a prediction of whether a compound will treat a disease. The guides are based on [Hetionet v1.0](https://github.com/dhimmel/hetionet) and are hosted at https://neo4j.het.io. For more details on our public Neo4j instance, see [this discussion](https://thinklab.com/discussion/hosting-hetionet-in-the-cloud-creating-a-public-neo4j-instance/216 "Hosting Hetionet in the cloud: creating a public Neo4j instance. Thinklab")

## Files

`neo4j-guides` contains a program to convert asciidoc guides to HTML guides.

`template-full.txt` and `template-mini.txt` are templates for creating asciidoc guides, which are designed to be formatted using Python's string formatting. `template-full.txt` is for compound–disease pairs without any metapaths that [provide support](https://thinklab.com/discussion/decomposing-predictions-into-their-network-support/229#2 "Calculating metapath and path contributions. Thinklab Discussion"). `template-full.txt` is for compound–disease pairs with supportive metapaths and hence supportive paths.

The HTML guides are exported to `guides`, which is ignored due to the large number of files. The compressed version of this directory is available in `guides.tar.bz2`.

## License

All original work in this repository is released as [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "CC0 1.0 Universal Public Domain Dedication").