https://github.com/dhimmel/pubmedpy

Utilities for interacting with NCBI EUtilities relating to PubMed
https://github.com/dhimmel/pubmedpy

bibliometrics eutilities ncbi pubmed python

Last synced: 6 months ago
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Utilities for interacting with NCBI EUtilities relating to PubMed

• Host: GitHub
• URL: https://github.com/dhimmel/pubmedpy
• Owner: dhimmel
• License: other
• Created: 2019-09-10T15:08:04.000Z (about 6 years ago)
• Default Branch: main
• Last Pushed: 2021-04-09T14:23:12.000Z (over 4 years ago)
• Last Synced: 2025-03-26T17:56:52.025Z (7 months ago)
• Topics: bibliometrics, eutilities, ncbi, pubmed, python
• Language: Python
• Homepage: https://pypi.org/project/pubmedpy/
• Size: 209 KB
• Stars: 11
• Watchers: 1
• Forks: 2
• Open Issues: 1
• Metadata Files:
  • Readme: readme.md
  • License: license.md

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README

          
# Utilities for interacting with NCBI EUtilities relating to PubMed

[![documentation](https://img.shields.io/badge/-Documentation-purple?style=for-the-badge&logo=read-the-docs)](https://git.dhimmel.com/pubmedpy/)

[![pubmedpy on PyPI](https://img.shields.io/pypi/v/pubmedpy.svg?color=blue&style=for-the-badge)](https://pypi.org/project/pubmedpy)

`pubmedpy` is a Python 3 package for interacting with [PubMed's E-Utilities API](https://www.ncbi.nlm.nih.gov/books/NBK25501/) as well the [PubMed Central OAI-PMH Service](https://www.ncbi.nlm.nih.gov/pmc/tools/oai/)

## Projects

This package was created while working on .

However, it draws on code and experience from several pre-existing projects.

Parts of the codebase derives from or supported the analyses for the following analyses:

1. **Analysis of ISCB honorees and keynotes reveals disparities**  

Trang T. Le, Daniel S. Himmelstein, Ariel A. Hippen Anderson, Matthew R. Gazzara, Casey S. Greene  

*Manubot* (2020-01-30) 

2. **On author versus numeric citation styles**  

Daniel Himmelstein  

*Satoshi Village* (2018-03-12) 

3. **The history of publishing delays**  

Daniel Himmelstein  

*Satoshi Village* (2016-02-10) 

4. **Publication delays at PLOS and 3,475 other journals**  

Daniel Himmelstein  

*Satoshi Village* (2015-06-29)