https://github.com/dhimmel/sider4
Processing SIDER 4.1: the side effect resource
https://github.com/dhimmel/sider4
compound drug rephetio side-effect sider sider4
Last synced: about 1 month ago
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Processing SIDER 4.1: the side effect resource
- Host: GitHub
- URL: https://github.com/dhimmel/sider4
- Owner: dhimmel
- License: other
- Created: 2015-08-08T21:24:04.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2016-02-03T22:34:20.000Z (over 9 years ago)
- Last Synced: 2025-04-12T23:51:54.341Z (6 months ago)
- Topics: compound, drug, rephetio, side-effect, sider, sider4
- Language: Jupyter Notebook
- Homepage: https://doi.org/10.15363/thinklab.d97
- Size: 13.2 MB
- Stars: 21
- Watchers: 3
- Forks: 12
- Open Issues: 2
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Metadata Files:
- Readme: README.md
- License: LICENSE.md
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README
# Processing side effect and indication data from SIDER 4
[](http://dx.doi.org/10.5281/zenodo.45521)
[SIDER](http://sideeffects.embl.de/ "SIDER Homepage: Side Effect Resource") is a resource of side effects extracted from drug labels. See the [SIDER 4 publication](https://doi.org/10.1093/nar/gkv1075 "The SIDER database of drugs and side effects") for more information.
This repository extracts data from SIDER 4.1 into user-friendly, tidy TSVs.
[`SIDER4.ipynb`](SIDER4.ipynb) is a single python notebook that performs the analysis.
The `data` directory contains:
+ [`side-effect-terms.tsv`](data/side-effect-terms.tsv): a list of side effect terms and names
+ [`side-effects.tsv`](data/side-effects.tsv): drug side effects mapped to DrugBank compounds
+ [`indications.tsv`](data/indications.tsv): drug indications
## License
SIDER data and their derivatives are licensed under [CC BY-NC-SA 4.0](http://creativecommons.org/licenses/by-nc-sa/4.0/ "Attribution-NonCommercial-ShareAlike 4.0 International"). All original content is released as [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "Public Domain Dedication").