https://github.com/diamondlightsource/httomo

High-throughput tomography pipeline
https://github.com/diamondlightsource/httomo

data data-analysis gpu gpu-acceleration high-performance imaging mpi tomography tomopy

Last synced: about 1 year ago
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High-throughput tomography pipeline

• Host: GitHub
• URL: https://github.com/diamondlightsource/httomo
• Owner: DiamondLightSource
• License: other
• Created: 2022-10-06T16:08:40.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2024-10-29T14:44:05.000Z (over 1 year ago)
• Last Synced: 2024-10-29T17:24:55.443Z (over 1 year ago)
• Topics: data, data-analysis, gpu, gpu-acceleration, high-performance, imaging, mpi, tomography, tomopy
• Language: Python
• Homepage: https://diamondlightsource.github.io/httomo/
• Size: 283 MB
• Stars: 6
• Watchers: 5
• Forks: 4
• Open Issues: 95
• Metadata Files:
  • Readme: README.rst
  • License: LICENSE

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README

          
HTTomo (High Throughput Tomography pipeline)

*******************************************************

HTTomo is a user interface (UI) written in Python for fast big data processing using MPI protocols.

It orchestrates I/O data operations and enables processing on a CPU and/or a GPU. HTTomo utilises other libraries, such as `TomoPy `_ and `HTTomolibgpu `_

as backends for data processing. The methods from the libraries are exposed through YAML templates to enable fast task programming.

Installation

============

See detailed instructions for `installation `_ .

Documentation

==============

Please check the full `documentation `_.

Running HTTomo:

================

* Install the module following any chosen `installation `_ path.

* For help with the command line interface, execute :code:`python -m httomo --help`

* Choose the existing `YAML pipeline `_ or build a new one using ready-to-be-used `templates `_.

* Optional: perform the validity check of the YAML pipeline file with the `YAML checker `_.

* Run HTTomo with :code:`python -m httomo run [OPTIONS] IN_DATA_FILE YAML_CONFIG OUT_DIR`, see more on that `here `_.

Release Tagging Scheme

======================

We use the `setuptools-git-versioning `_

package for automatically determining the version from the latest git tag.

For this to work, release tags should start with a :code:`v` followed by the actual version,

e.g. :code:`v1.1.0a`.