https://github.com/dib-lab/khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
https://github.com/dib-lab/khmer

bioinformatics bloom-filter count-min-sketch dna graph-traversal k-mer python

Last synced: 28 days ago
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In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

• Host: GitHub
• URL: https://github.com/dib-lab/khmer
• Owner: dib-lab
• License: other
• Created: 2012-05-15T03:52:53.000Z (over 13 years ago)
• Default Branch: master
• Last Pushed: 2024-02-17T11:37:33.000Z (almost 2 years ago)
• Last Synced: 2025-11-05T08:16:53.644Z (about 1 month ago)
• Topics: bioinformatics, bloom-filter, count-min-sketch, dna, graph-traversal, k-mer, python
• Language: Python
• Homepage: http://khmer.readthedocs.io/
• Size: 50.4 MB
• Stars: 780
• Watchers: 67
• Forks: 297
• Open Issues: 353
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.md
  • Contributing: .github/CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.rst
  • Citation: CITATION
  • Authors: authors.csv

Awesome Lists containing this project

• awesome-scientific-python - khmer - k-mer counting, filtering, and graph traversal. (Domain-specific libraries / Bioinformatics)