https://github.com/digitalslidearchive/dsa-wsi-deid

A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
https://github.com/digitalslidearchive/dsa-wsi-deid

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Last synced: about 1 year ago
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A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.

• Host: GitHub
• URL: https://github.com/digitalslidearchive/dsa-wsi-deid
• Owner: DigitalSlideArchive
• License: apache-2.0
• Created: 2020-08-13T17:56:04.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2025-04-09T18:05:03.000Z (about 1 year ago)
• Last Synced: 2025-04-09T18:27:56.318Z (about 1 year ago)
• Language: Python
• Homepage: https://digitalslidearchive.github.io/DSA-WSI-DeID/
• Size: 10.2 MB
• Stars: 16
• Watchers: 8
• Forks: 8
• Open Issues: 15
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.md
  • License: LICENSE

Awesome Lists containing this project

README

          
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WSI DeID |build-status| |license-badge|

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This tool builds on the Digital Slide Archive, HistomicsUI, and Girder to provide controls and workflows for redacting PHI/PII from whole slide images (WSI).  Initially, this works with Aperio, Hamamatsu (ndpi), and Philips WSI files.  It can work with Philips iSyntax files if provided with the appropriate SDK.

Developed by Kitware, Inc. with funding from The National Cancer Institute of the National Institutes of Health.

.. |build-status| image:: https://circleci.com/gh/DigitalSlideArchive/DSA-WSI-DeID.png?style=shield

    :target: https://circleci.com/gh/DigitalSlideArchive/DSA-WSI-DeID

    :alt: Build Status

.. |license-badge| image:: https://img.shields.io/badge/license-Apache%202-blue.svg

    :target: https://raw.githubusercontent.com/DigitalSlideArchive/DSA-WSI-DeID/master/LICENSE

    :alt: License

Browser Support

===============

WSI DeID works best using a recent version of the Chrome or Firefox browser.

Navigating the Documentation

============================

* `docs/INSTALL.rst `_ contains system installation and administration information, mostly focused on running terminal commands.

* `docs/GIRDER.rst `_ contains reference information on the Girder platform, which is the basis for the WSI DeID.

* `docs/USAGE.rst `_ contains usage information, mostly focused on interacting with the system through a web browser.

* `docs/GLOSSARY.rst `_ contains a glossary of technical terms.

* `docs/ERROR-TABLES.rst `_ contains tables of explanations for error messages that users may encounter.

* `docs/CUSTOMIZING.rst `_ contains details on customizing the workflow for different use cases.

* `docs/APIUSAGE.rst `_ describes how to make API called for perform common workflow actions.

* `docs/rationale.md `_ contains a rationale of the SEER WSI DeID pilot project.