https://github.com/dilawar/drawsbml

Draw Signalling Pathway (SBML format)
https://github.com/dilawar/drawsbml

drawing graphviz sbml signalling

Last synced: about 2 months ago
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Draw Signalling Pathway (SBML format)

• Host: GitHub
• URL: https://github.com/dilawar/drawsbml
• Owner: dilawar
• License: gpl-3.0
• Created: 2017-12-08T12:10:32.000Z (about 7 years ago)
• Default Branch: master
• Last Pushed: 2021-07-01T05:19:33.000Z (over 3 years ago)
• Last Synced: 2023-03-22T15:28:29.432Z (almost 2 years ago)
• Topics: drawing, graphviz, sbml, signalling
• Language: Python
• Homepage:
• Size: 1.2 MB
• Stars: 2
• Watchers: 0
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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# drawsbml

Draw Signalling Pathway in SBML.

# Install

```sh

python3 -m pip install drawsbml

```

You may have to install `graphviz` manually.

- graphviz

    `sudo apt install graphviz`

# Usage

```sh

drawsbml -i ./BIOMD0000000002.xml -o a.pdf

```

## help

```sh

drawsbml -h

```

## Examples

Following is the drawing of [this mode](https://www.ebi.ac.uk/biomodels-main/BIOMD0000000100)

![BIOMD0000000100.xml](./tests/BIOMD0000000100.xml.gv.png)

Following is the drawing of [this model](https://www.ebi.ac.uk/biomodels-main/BIOMD0000000200)

![BIOMD0000000200.xml](./tests/BIOMD0000000200.xml.gv.png)

# Need help

This is a very basic script for quickly plotting a moderate size SBML model.

In case, you need help of want enhancement, please open an issue on this repository. Attach your SBML model file.