https://github.com/dilawar/jugnoo

ROI locatior in imaging data.
https://github.com/dilawar/jugnoo

calcium-imaging imaging-informatics roi

Last synced: 3 months ago
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ROI locatior in imaging data.

• Host: GitHub
• URL: https://github.com/dilawar/jugnoo
• Owner: dilawar
• Created: 2016-01-02T08:12:26.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2019-02-28T05:14:15.000Z (about 6 years ago)
• Last Synced: 2025-01-04T14:14:22.413Z (5 months ago)
• Topics: calcium-imaging, imaging-informatics, roi
• Language: Python
• Homepage:
• Size: 323 KB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 2
• Metadata Files:
  • Readme: README.md

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README

        
# ROI Locator

__Jugnoo__ is Hindi/Urdu word for a firefly.

These sets of scripts process calcium imaging data (tiff format) to locate the

possible interesting regions which might be firing neurons. 

These scripts are very sensitive to paramters in `config.py` files. These paramters are not likely

to me make much sense to general user. If you think that these script might do what 

you are looking for, do write an email for details. Or may be open a ticket, it will 

motivate me to write the documentation (with a lot of grammar and spelling mistakes).

For neural activity like the following (click to see the youtube video)

# Example

[![Calcium activity](http://img.youtube.com/vi/04Mr-_LCVg0/0.jpg)](http://www.youtube.com/watch?v=04Mr-_LCVg0)

These script detect the following region of interest:

![](https://raw.githubusercontent.com/dilawar/roi_locator/master/_images/demo1.png)

More examples and instrcution on how to use these script can be found on [Wiki](https://github.com/dilawar/roi_locator/wiki) [Work in progress].