https://github.com/dmenne/breathteststan

Stan-based fitting function for use with dmenne/breathtestcore. Stan functions are in a separate package for easier testing.
https://github.com/dmenne/breathteststan

bayesian-methods fitting medical nonlinear stan

Last synced: 24 days ago
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Stan-based fitting function for use with dmenne/breathtestcore. Stan functions are in a separate package for easier testing.

• Host: GitHub
• URL: https://github.com/dmenne/breathteststan
• Owner: dmenne
• Created: 2017-04-13T14:28:39.000Z (almost 9 years ago)
• Default Branch: main
• Last Pushed: 2025-09-09T05:48:59.000Z (6 months ago)
• Last Synced: 2025-12-26T11:57:39.641Z (3 months ago)
• Topics: bayesian-methods, fitting, medical, nonlinear, stan
• Language: R
• Homepage: https://dmenne.github.io/breathteststan/
• Size: 6.75 MB
• Stars: 3
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# breathteststan: Bayesian fit to 13C Breath Test Time series for gastric emptying

Dieter Menne\

Menne Biomed Consulting Tübingen, Germany\

\

[dieter.menne\@menne-biomed.de](mailto:dieter.menne@menne-biomed.de)

[![grand-total](https://cranlogs.r-pkg.org/badges/grand-total/breathteststan)](https://CRAN.R-project.org/package=breathteststan) [![last-release](http://www.r-pkg.org/badges/last-release/breathteststan)](https://CRAN.R-project.org/package=breathteststan) [![R build status](https://github.com/dmenne/breathteststan/workflows/R-CMD-check/badge.svg)](https://github.com/dmenne/breathteststan/actions) [![Codecov test coverage](https://codecov.io/gh/dmenne/breathteststan/branch/main/graph/badge.svg)](https://app.codecov.io/gh/dmenne/breathteststan?branch=master)

Dieter Menne Menne Biomed Consulting 

[dieter.menne\@menne-biomed.de](mailto:dieter.menne@menne-biomed.de)

Fit 13C time series data with Bayesian methods using [Stan](https://mc-stan.org/). This is an add-on to package [breathtestcore](https://github.com/dmenne/breathtestcore). The Stan functions have been moved to this package to avoid long compile and test times.

![breathtestshiny](docs/reference/figures/breathtestshiny.png) ![README](docs/reference/figures/README-01.png)