https://github.com/dmnfarrell/mtbc_analyses
Code for genomics analysis of MTBC locii.
https://github.com/dmnfarrell/mtbc_analyses
Last synced: 10 months ago
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Code for genomics analysis of MTBC locii.
- Host: GitHub
- URL: https://github.com/dmnfarrell/mtbc_analyses
- Owner: dmnfarrell
- License: agpl-3.0
- Created: 2019-10-02T13:43:02.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2023-03-27T15:02:11.000Z (about 3 years ago)
- Last Synced: 2025-04-22T06:58:50.340Z (about 1 year ago)
- Language: Jupyter Notebook
- Homepage:
- Size: 13.1 MB
- Stars: 5
- Watchers: 2
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# Notebooks and data for genomic MTBC analyses
## RD900
* https://www.ncbi.nlm.nih.gov/gene/1090581
* https://www.uniprot.org/uniprot/Q7U095
## TBD1
* https://www.nature.com/articles/s41467-020-14508-5
* https://www.ncbi.nlm.nih.gov/nuccore/FR878060.1?report=graph
## Useful files
* genomes_data.csv - table of links to raw read data for selected MTBC species with some meta data
* tools.py - various functions used in some of the notebooks in this repo
* mtb_assemblies.csv - table of known assemblies